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AT2G18810.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF313)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT2G31720.1); Has 125 Blast hits to 125 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSNReggNOG:ENOG41108N6EMBL:AC005724EMBL:CP002685EnsemblPlants:AT2G18810EnsemblPlants:AT2G18810.1entrez:816396
Gene3D:2.40.330.10GeneID:816396Genevisible:Q9ZV39GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT2G18810.1hmmpanther:PTHR31541HOGENOM:HOG000155152InParanoid:Q9ZV39InterPro:IPR003340InterPro:IPR005508InterPro:IPR015300
KEGG:ath:AT2G18810OMA:RREINYGPaxDb:Q9ZV39Pfam:PF03754Pfam:Q9ZV39Pfscan:PS50863PhylomeDB:Q9ZV39
PIR:H84568PRIDE:Q9ZV39PRO:PR:Q9ZV39PROSITE:PS50863ProteinModelPortal:Q9ZV39Proteomes:UP000006548RefSeq:NP_179471.1
SUPFAM:SSF101936TAIR:AT2G18810UniGene:At.52816UniProt:Q9ZV39
Coordinates (TAIR10) chr2:-:8147939..8149469
Molecular Weight (calculated) 26638.60 Da
IEP (calculated) 5.45
GRAVY (calculated) -0.57
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRAFAYEEI GETSTEAHAS VEDNKRDRTR RVINYNLRST TMISSLSKRL KIDECKNQDP EQNPNRVASS PSLCHVKSKR PQKGVSNKPI LDMDFLNEEE
101: LEKIDRHYKK ISDSDKGADV ILVNSEGLQR KLKLKRWDMT STSNYVLGSG WNKVVTENIL ETGTRLRLWS FHSPDMLFFA LVLSDPDLAP TKDWECLNLL
201: AKLTVETACL EASQDADTMS SLVSDTELDL ELRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)