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AT2G03040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.770
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : emp24/gp25L/p24 family/GOLD family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
emp24/gp25L/p24 family/GOLD family protein; INVOLVED IN: transport; LOCATED IN: integral to membrane; EXPRESSED IN: pollen tube; CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038), emp24/gp25L/p24 (InterPro:IPR000348); BEST Arabidopsis thaliana protein match is: emp24/gp25L/p24 family/GOLD family protein (TAIR:AT2G03290.1); Has 637 Blast hits to 637 proteins in 130 species: Archae - 0; Bacteria - 0; Metazoa - 362; Fungi - 29; Plants - 206; Viruses - 0; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XTBQeggNOG:KOG1691EMBL:AC004138EMBL:CP002685EnsemblPlants:AT2G03040EnsemblPlants:AT2G03040.1entrez:814833
GeneID:814833GO:GO:0006810GO:GO:0016021Gramene:AT2G03040.1hmmpanther:PTHR22811hmmpanther:PTHR22811:SF47HOGENOM:HOG000160227
InterPro:IPR009038InterPro:IPR015720KEGG:ath:AT2G03040OMA:NEDHHPLPANTHER:PTHR22811Pfam:PF01105Pfscan:PS50866
PhylomeDB:Q9SLM5PIR:F84443PROSITE:PS50866Proteomes:UP000006548Reactome:R-ATH-6807878RefSeq:NP_178404.1SMART:SM01190
STRING:3702.AT2G03040.1TAIR:AT2G03040UniGene:At.66430UniProt:Q9SLM5
Coordinates (TAIR10) chr2:-:892823..893572
Molecular Weight (calculated) 19141.00 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.38
Length 166 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLRRSSILL LIIALLSPRT LSMRYELKSS KTKCIGEEIH ENAMSIGKYF IVNPNEDHHP LPDSHKIIVK VMPPQGKNLH EADNVEAGQF SFTAYENGSY
101: VACITAIDYK PETTLTIDFD WKTGVHSKEW TNVAKKSQVD MMEYQVKTLM DTVISIHEEM YYLRER
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)