AT1G80220.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.946 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1644) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT2G26050.1); Has 311 Blast hits to 289 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 37; Fungi - 0; Plants - 274; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30167839..30168606 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29160.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.84 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||
| Length | 255 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCKERRIVCE SSNKIRVSPY PLRSTRTNKL KAIESPIDES NWEDVRCMIC MEPPHEAVLL TCSSSLNGCR PYMCGTSFRH SNCFKQFCRN NRKKRSNTKT 101: LHCPLCRGEV LETKKASKTA RRFMNAKPRS CPVDGCEFSG TYAHLNKHLK TEHQGLVPAK VDPQRQSRWE MLVRHAEYVN LMSAAGIPHM SGVVHHQLPN 201: NHHLPMFQVG FSGTMQNLDG PSNVSNGFGP VNYPPVFVPR LQFRPVFDMY RDRIP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)