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AT1G74400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.985
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 30893 Blast hits to 12576 proteins in 195 species: Archae - 0; Bacteria - 17; Metazoa - 10; Fungi - 48; Plants - 30449; Viruses - 0; Other Eukaryotes - 369 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011765EMBL:CP002684EnsemblPlants:AT1G74400EnsemblPlants:AT1G74400.1entrez:843781
Gene3D:1.25.40.10GeneID:843781Genevisible:Q9CA73Gramene:AT1G74400.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF492InParanoid:Q9CA73
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT1G74400OMA:QIHALVRPaxDb:Q9CA73Pfam:PF01535Pfam:PF13041
Pfam:Q9CA73Pfscan:PS51375PhylomeDB:Q9CA73PIR:G96772PRIDE:Q9CA73PRO:PR:Q9CA73PROSITE:PS51375
ProteinModelPortal:Q9CA73Proteomes:UP000006548RefSeq:NP_177580.1SMR:Q9CA73STRING:3702.AT1G74400.1SUPFAM:SSF48452TAIR:AT1G74400
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.52512UniProt:Q9CA73
Coordinates (TAIR10) chr1:+:27963953..27965341
Molecular Weight (calculated) 52666.80 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.22
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MRFILRHLHS LGVINKFDSF LLHFHTKSLK SNHTLKQYLE SGEPIKALLD FRHRFRQSPS FVDSFSVLFA IKVSSAQKAS SLDGRQIHAL VRKLGFNAVI
101: QIQTSLVGFY SSVGDVDYAR QVFDETPEKQ NIVLWTAMIS AYTENENSVE AIELFKRMEA EKIELDGVIV TVALSACADL GAVQMGEEIY SRSIKRKRRL
201: AMDLTLRNSL LNMYVKSGET EKARKLFDES MRKDVTTYTS MIFGYALNGQ AQESLELFKK MKTIDQSQDT VITPNDVTFI GVLMACSHSG LVEEGKRHFK
301: SMIMDYNLKP REAHFGCMVD LFCRSGHLKD AHEFINQMPI KPNTVIWRTL LGACSLHGNV ELGEEVQRRI FELDRDHVGD YVALSNIYAS KGMWDEKSKM
401: RDRVRKRRMP GKSWIELGSI INEFVSGPDN NDEQLMMGEI SEVLRCLVSC MTSFDCVIGK KM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)