AT1G72860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.961 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G17600.1); Has 17128 Blast hits to 12682 proteins in 562 species: Archae - 4; Bacteria - 839; Metazoa - 1175; Fungi - 47; Plants - 14820; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:27417096..27420778 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132537.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1163 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSPIW KYDVFLSFRG EDTRKNIVSH LHKQLVDKGV VTFKDDKKLE LGDSISEEIS RAIQNSTYAL VILSENYASS SWCLDELRMV MDLHLKNKIK 0101: VVPIFYGVDP SHVRHQTGSF TFDKYQDSKM PNKVTTWREA LTQIASLAGK DFETCEDEAS MIEEIVKDIS KKLLIMQPVD FSDIVGMNAH MERLSPLLSM 0201: DSENEVRMIG IWGMGGIGKT TIAKCLFDQF SQGFPARCFL ENVSKIYRKG GVSSLAEKFL STTLGLSKKK MKGSGVKLGP QEIKARFGCR KVFVVLDNVD 0301: DMRQMHAFAQ ESSWFGPGSR IIITTRDKGL LNTYGVRTVY EVKCMDNDAA LQLFNQLAFK GALPPSELYE KLSIRASWLA QGLPVAIEAY GLFFRRMTSL 0401: KEWDDALCRF IEAPDESVME ILKISYDGLE ETDKNVFLHV ACLFNGEPLR RATTLLDDGV LQGCLGLKIL AEKSLIEITA SGYIKMHNLV DQTARAIVNQ 0501: ESMQRRHGRG VLWNPYEIYE LLKRNTTSEP TNCMALHMCD MVYALHLGGY TAYHDTLKFL KIYKHSNHIK SKLLFSGDDT NLLSSRLRLL HWDAFPLTTF 0601: PCRFQPQDLV EIILHRSNLT SFWKETVVKA LNRSMLITMY LLVLNILAIF LFFVEYAQGM PNLRRLDLSD SENLEQLPDL SMAVNLEELI TQGCKRLKKI 0701: PESISYLTRL TTLDVSYCEE LASYITIREL NRSGRQIALY FSGKEVETRS IANLSIGGNI HIQMFWLDGN VDHLSFTTEQ QGPDKLTKKE KQQAPGELTK 0801: REQQQEPRKK TILCGFGSLM RKGRKVKATS EFLDHEWMMQ RDQLAPDNQQ ALEFSTRTRQ ALQFLPEFHG QESVKKAQGK SQPTSKFHGF TSVDISRFRY 0901: SSDGASFLCF SLSMFPCVKE LILINLNIKV IPDDVCGLKF LEKLDWSGND FETLPETMNQ LPRLKYASFR NCCRLKALPA LVQLETIKLS GCINLQSLLE 1001: LSYAEQDCGR FQWLELWVDG CKSIRSILDQ LRHFIKLSYL DLSSHEFEKL PSSIEVLSSL RTLCLNKCKK LKSIEGLPLC LKSLYAHGCE ILETVSLPLN 1101: HSVKHLDLSH CFGLKRDEHL IAQFLNEGEN EEVCFQLILP LLHCKQPELD HSPSFFLFVV VLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)