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AT1G72860.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.968
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, leaf; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT1G17600.1); Has 17128 Blast hits to 12682 proteins in 562 species: Archae - 4; Bacteria - 839; Metazoa - 1175; Fungi - 47; Plants - 14820; Viruses - 0; Other Eukaryotes - 243 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ZVQHEMBL:CP002684EnsemblPlants:AT1G72860EnsemblPlants:AT1G72860.1entrez:843617Gene3D:3.40.50.10140Gene3D:3.40.50.300
Gene3D:3.80.10.10GeneID:843617GO:GO:0006952GO:GO:0007165GO:GO:0016021GO:GO:0043531Gramene:AT1G72860.1
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF169InParanoid:F4IF00InterPro:IPR000157InterPro:IPR002182InterPro:IPR011991InterPro:IPR027417
InterPro:IPR032675iPTMnet:F4IF00KEGG:ath:AT1G72860OMA:DALCRFIPaxDb:F4IF00Pfam:PF00931Pfam:PF01582
Pfscan:PS50104PRIDE:F4IF00PROSITE:PS50104ProteinModelPortal:F4IF00Proteomes:UP000006548RefSeq:NP_177429.2SMART:SM00255
SMR:F4IF00SUPFAM:SSF46785SUPFAM:SSF52047SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT1G72860
TMHMM:TMhelixUniGene:At.35053UniGene:At.49497UniProt:F4IF00
Coordinates (TAIR10) chr1:-:27417096..27420778
Molecular Weight (calculated) 132537.00 Da
IEP (calculated) 7.41
GRAVY (calculated) -0.18
Length 1163 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASSSSSPIW KYDVFLSFRG EDTRKNIVSH LHKQLVDKGV VTFKDDKKLE LGDSISEEIS RAIQNSTYAL VILSENYASS SWCLDELRMV MDLHLKNKIK
0101: VVPIFYGVDP SHVRHQTGSF TFDKYQDSKM PNKVTTWREA LTQIASLAGK DFETCEDEAS MIEEIVKDIS KKLLIMQPVD FSDIVGMNAH MERLSPLLSM
0201: DSENEVRMIG IWGMGGIGKT TIAKCLFDQF SQGFPARCFL ENVSKIYRKG GVSSLAEKFL STTLGLSKKK MKGSGVKLGP QEIKARFGCR KVFVVLDNVD
0301: DMRQMHAFAQ ESSWFGPGSR IIITTRDKGL LNTYGVRTVY EVKCMDNDAA LQLFNQLAFK GALPPSELYE KLSIRASWLA QGLPVAIEAY GLFFRRMTSL
0401: KEWDDALCRF IEAPDESVME ILKISYDGLE ETDKNVFLHV ACLFNGEPLR RATTLLDDGV LQGCLGLKIL AEKSLIEITA SGYIKMHNLV DQTARAIVNQ
0501: ESMQRRHGRG VLWNPYEIYE LLKRNTTSEP TNCMALHMCD MVYALHLGGY TAYHDTLKFL KIYKHSNHIK SKLLFSGDDT NLLSSRLRLL HWDAFPLTTF
0601: PCRFQPQDLV EIILHRSNLT SFWKETVVKA LNRSMLITMY LLVLNILAIF LFFVEYAQGM PNLRRLDLSD SENLEQLPDL SMAVNLEELI TQGCKRLKKI
0701: PESISYLTRL TTLDVSYCEE LASYITIREL NRSGRQIALY FSGKEVETRS IANLSIGGNI HIQMFWLDGN VDHLSFTTEQ QGPDKLTKKE KQQAPGELTK
0801: REQQQEPRKK TILCGFGSLM RKGRKVKATS EFLDHEWMMQ RDQLAPDNQQ ALEFSTRTRQ ALQFLPEFHG QESVKKAQGK SQPTSKFHGF TSVDISRFRY
0901: SSDGASFLCF SLSMFPCVKE LILINLNIKV IPDDVCGLKF LEKLDWSGND FETLPETMNQ LPRLKYASFR NCCRLKALPA LVQLETIKLS GCINLQSLLE
1001: LSYAEQDCGR FQWLELWVDG CKSIRSILDQ LRHFIKLSYL DLSSHEFEKL PSSIEVLSSL RTLCLNKCKK LKSIEGLPLC LKSLYAHGCE ILETVSLPLN
1101: HSVKHLDLSH CFGLKRDEHL IAQFLNEGEN EEVCFQLILP LLHCKQPELD HSPSFFLFVV VLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)