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AT1G72270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.658
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Ribosome 60S biogenesis N-terminal (InterPro:IPR021714); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G27010.1); Has 772 Blast hits to 657 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 344; Fungi - 94; Plants - 322; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XR9WeggNOG:KOG1791eggNOG:KOG4585EMBL:CP002684EnsemblPlants:AT1G72270EnsemblPlants:AT1G72270.1entrez:843559
ExpressionAtlas:F4IBR2GeneID:843559GO:GO:0005739Gramene:AT1G72270.1hmmpanther:PTHR13500InParanoid:F4IBR2InterPro:IPR016024
InterPro:IPR021714InterPro:IPR027806InterPro:IPR032436ncoils:CoilOMA:ESSPEMGPaxDb:F4IBR2Pfam:PF11707
Pfam:PF13359Pfam:PF16201PRIDE:F4IBR2ProteinModelPortal:F4IBR2Proteomes:UP000006548RefSeq:NP_565039.4STRING:3702.AT1G72270.1
SUPFAM:SSF48371TAIR:AT1G72270UniGene:At.21413UniProt:F4IBR2
Coordinates (TAIR10) chr1:-:27199733..27211122
Molecular Weight (calculated) 319865.00 Da
IEP (calculated) 5.62
GRAVY (calculated) -0.01
Length 2845 amino acids
Sequence (TAIR10)
(BLAST)
0001: MVAGKRKSDR NPTNVSDKLG LKDPLLRRLS SAAAVTNSFL QANDLFLSPS QTLRLESLIS SLPISPSPSS SSSAITTTTW FNRFLTSATE DEDDPRWCLY
0101: FRMSKSTFFS LYSILSHSSL PSFAATIFRL AHGASYECLV HRFGFDSTSQ ASRSFFTVCK LINEKLSQQL DDPKPDFSPN LLPNCYGVVG FGRFEVKGKL
0201: LGAKGSILVQ ALVDSNGRFV DISAGWPSTM KPEAIFRQTK LFSIAEEVLS GAPTKLGNGV LVPRYILGDS CLPLLPWLVT PYDLTSDEES FREEFNNVVH
0301: TGLHSVEIAF AKVRARWRIL DKKWKPETIE FMPFVITTGC LLHNFLVNSG DDDDSVEECV NGCEAGDNGE MRKDDDKEEE TRSFEGEAYR ESKRIRDAIA
0401: ENLSRRKLLL MVESTSDLED QGNEFFQEHK YADDALNSYL KVPVMAFRPS LEAKLRQLLH NICLHEFKLC SDTAKDFVKL LKGETGSDLL RLYFQSSPNF
0501: TELLEAWNLH HGKQGLSYIF SLIQTILSHP EGKSSDIGRA LDQFCRLLIE KKLLDIYKAL SNTKRLQNAA LSLLASIVRR GPGMASEMAR TFDFHGFPKQ
0601: APRRAFVEFA ISFLQVGKPS LLKSILEKKQ LYSQLLQGLE EDDDDTLASV LSTLKDKILV QESSLSPRLM SALFGPKTLE QLVIISERED GGIVNELAYD
0701: VLVKVCTDPS NGLMPDAYRK GNIKRLLALM KSLKATETGY PRDLLLAIIR GRPSLASAFF DEFPYNVEDF TSPYWFSSIS LAADLVSSVR MSSSFDFLNP
0801: DKPPSGGSEV HTIMKCICPR PFSQSLIARG MHHSVFLVKH GTLRFLWETL RLWDSFVTAW KLCSVDQIQA SLERDIIGEV ISFFPDFQVL WTVLKVSQKL
0901: SLKRKAELDI GLVDRKKRLK TSEMAVLEEL ASDMVIGGLG SDTNIFLEED TGDAQLTDQE DAENEYLGIV SEIWGSEFCS KPIASVDEAE MFFQIKLLDT
1001: LGIYVRSVPN VPKGLFDVFM KFLSSSSITA VGNTLFQQCA IVRSSLSHLK GVSIGFSPLI VCILQKCVKL LNSESQAYSL PNKSAVSLYV YSSLKYILQT
1101: QVDPRPLSCL VQSVLSEVVD GSKDSLCEWL PLRVLLLFTQ SLSEPFILHS GRTTCRLADT SFAATLDEIK GLMRSITPDE VGGVVNAFSS ALICATPESI
1201: LKNFASVMAV SWDLYGTSFS FLLSIIFLEK NFLGNLSKLS PDLFMRGLEL TVSRNLREGT VDSEIDFADH SSTTEKIKSK MDIPDIESLA FSVFLEQTPF
1301: PVLLNEIMSM DISCLPEFPR LTELLLLKVS QPKSDSIESD IRLILFWLFQ IRSLYKVQPH PVLCQQSEIC LRLMRHLFSQ ISKLDLVSGP SADKLKHQVP
1401: QTVLSHPVVM ALLESPADCD TLPRVQNVEV FSETLLTAGR LGISEIDQHI LDLLASTCEN FLFEESHIER KGDLRADKSI MAFKVLVERL LLVFRDKFEL
1501: CVGSQSYAPL LQHPQLIQAL LKFISPFKLL YLAHSMLSKT YEEELASPIL SFGLDIAGGA FEMLILYSRQ PAAKRRVYDF LWELEDKNYD SRIIEQVYSL
1601: ACRFSTSFGL ASADTCLLKV VSGIFRGGNS QHCSVHQLTV IMSQIVGRTS KDLIIHCINQ ASMSRAKILF YLVESSPLHL SVFGHIFFSM LSKLQGDSAL
1701: ITDDQFVMLL PPVLLFLASV FAKLEKSCSK CLDITSLYSN ILIKGFLQWP KFCSGCIFEE KYEEILLSTS EDIETMFNAS LLGKAVRMFQ YHFALTESPT
1801: KTDDLLKVFY SMFPHTSAGK EMLDYEIKEV DVKSVDQMFN ITNRLVAKVE LSRICLFPED SCMHHLKRQA GGCVKESSPE MGSNRESLLN PLLNAFVNTW
1901: QCVVERSDGY YKGNSEREEQ DKYWFLCKSL EYFILRSILK FLEGMCEELA HLDSLPFLER LMNLILRYRF KDSKTLKILR EIFSFLSRGK YSYHFQDLVS
2001: HSQFTESISS LSISSSHTGE VIRPVSSILK LLIIPNLNSV RVENCSLEAP EYYLSQIEIL KILGVLLCKC GKDSGIFLKD LHFRLLCSYG ATPSEIDLQS
2101: YKLMHDIKLI VGEHTLNDSE DYLWGNAALK IREGLPSDGS YSDIVEDLRQ SLFKENLCLD PKRCAQTVLY FPYGRTAEAS DNTYIYDDPI SEKCSPAIER
2201: YDPVFILRVS VQLLSMVYIE PVEFASLGLL AVAFASMSSA DLGIRKLGYE TLGIFVDVLE SCRKNMHVTV LRLLLTYVQN GVEEQWQRIP TVSAVFSAEA
2301: SLILLDSSHE HYVPIIKLLK RSSTLKLRGI PLFHDFFGSS TVNFRSQRLW VLRLVFVGLE SEEDAQIYIR NSILETVMGF FSSPLADDET KGLILQVVRK
2401: SVKLHKMARH LVENCGLLSW CSSFFSMLTT KPTGDEDSRF VVVLEVITDA LASRNDTEWS QRSALEGLME ISSRLYTLLG DGLVSMQENG TSILSATLKI
2501: SHKRKKNQPH FTITIEGIFQ LFEAAANCDS PQVEASAEGR LDTILMSTPP VEIICMDVHR LRRFLLWGSS TALKSDLKKG SKPGECHQDT KTHTEETMVA
2601: KFLRWLLASV ILGKLYSEAN DSDQIVLSET KPETLPTLLE YLKKRNLQGS VTNSEHIIGE VIVYLQKHLL CRNYGVLLPS VVFALSLMVL RNGLETTGTE
2701: SEGGYKVIRS LCSRISSPTE AIPVWRWSYH QDLPSERATD PKEIDELYAC QELLLIFSDM LRETPRESQQ TLLLGESFDM SSVFEWERVS SLSFPLLRFL
2801: PLLPQSSISL TVLPTILSFT DSGDDSLEEC VNGCEADDNG EQARA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)