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AT1G70020.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.797
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1163)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1163); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1163 (InterPro:IPR009544); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1163) (TAIR:AT5G39330.1); Has 42 Blast hits to 42 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC002062EMBL:CP002684EMBL:DQ446416EnsemblPlants:AT1G70020EnsemblPlants:AT1G70020.1entrez:843339GeneID:843339
GO:GO:0016021Gramene:AT1G70020.1hmmpanther:PTHR31125hmmpanther:PTHR31125:SF1HOGENOM:HOG000064691InterPro:IPR009544KEGG:ath:AT1G70020
OMA:YTCDETAPANTHER:PTHR31125Pfam:PF06651PhylomeDB:O04542PIR:H96722PIRSF:PIRSF026169Proteomes:UP000006548
RefSeq:NP_177160.1STRING:3702.AT1G70020.1TAIR:AT1G70020TMHMM:TMhelixUniGene:At.52456UniProt:O04542
Coordinates (TAIR10) chr1:+:26377370..26378153
Molecular Weight (calculated) 25754.00 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.23
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MDYENGEIIA PKSTTLWDRL TPRQKKYVFT CVLVFLIAIA TAAIIVYAYS ESAQERREKR RKEQRIENYA PDIIIPSMDF TVLNLTETSL SVKWDLVIRL
101: PSDLPGYYMC LKGDLQTFIL YKGVTIANSS LDSYNLIPNW PQLLNTSSVI ASEGDMDSVV VKDIMDDIKE RRDMRFGSRL LLPDCRSGRK MNYTCDETAV
201: RFEPGSQRKA TAFENAAPIC HYIHT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)