AT1G68940.3
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.979 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Armadillo/beta-catenin-like repeat family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Armadillo/beta-catenin-like repeat family protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: senescence-associated E3 ubiquitin ligase 1 (TAIR:AT1G20780.1); Has 2072 Blast hits to 1938 proteins in 179 species: Archae - 0; Bacteria - 128; Metazoa - 110; Fungi - 40; Plants - 1633; Viruses - 3; Other Eukaryotes - 158 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:25921453..25925374 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117840.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.24 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1061 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEIQTAESNV ICSIDIFESL SDSVDVAKKL VEKSQESNEA ESTTDLRSIE AGFEGVVKQM GETLQSIPES TFDEEEYIGV VIQSLSNEMQ NATIGDGSKS 0101: EMINNGQQKI SAKHTPDIVS EQMEEDLYPT DPEFSYESYM MYSESQSQMT DIPDIPSKST DVSRQRKHGN HSESQSLVTE IPDIPSQSTN VSSQRKHGNL 0201: SKSQSQSTEI PDIPSQSSNA SSQRKYGNLS ESLSMLPQVT QFMEPPYQAF ICPLTKEIME DPVTTETGVT CERQAVIEWF DSFGNSDEIN CPVTGQKLTT 0301: ELSANVVLKT IIQEWKVRNE AARIKVAHAA LSLGGSESMV IDALRDLQMT CEGKEYNKVQ VREAGIIQLL DRYLTYRSKD VRFELLKFLR TLADEETDDG 0401: KEMIVKTITM SCVIKLLGSS HQPVRHAAQA LLLELSKSQH ACEKIGTARG AILMLVTAKY NRELDSFASE TSDQILRNLE KCPENIKQMA ESGLLEPLLG 0501: HLAEGSEETQ VAMAAYLVEI DIGHEKKTYV AEKACPALIG LVQSENIDAR RAAFKALAHI SLYHPNNKIL VEVGIIKIMV EEMFTKRVFS DLMNSRNEAA 0601: TILANILESG LEHETFEVNT HGHTLGSDYF VYNIIHMLKN SSPDDLNIDL IRILLSLSKS PRAMATIVSV IKETDASFAM IELINNPHDE LGVGALKLLI 0701: ALTPYIGHTL SERLCKTRGQ PENLIQCPVE ANQITEKHAV SAKLLAKLPH QNLTLNLALV NESIVSEILH AIHLIQRSGA RTSRYATDFL EGLVGILVRF 0801: TTTLYEPQMM YLARNHDLTS VFVDLLMKTS SDEVQRLSAT GLENLSSTTM TLSRPPQPRS TKFMGSLSMP RSFSLRSSKK KQIEICAIHR GVCSAKNTFC 0901: LVEANAITKL LACLQSDKVE VVESALAAIC TLLDDKVEVE KSLSMLSEMN AVQLILNAVK EHKKESLLQK AFWMIDKFII RGGDKYASEI SQDRMLSGLE 1001: SEKILKVKRD KSHDWCAEIS VERGDGGEIW GKIVWSGAVY KLDPLSHSFS VKVLHSASVH V |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)