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AT1G67640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.433
plasma membrane 0.309
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transmembrane amino acid transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine histidine transporter 2 (TAIR:AT1G24400.1); Has 4178 Blast hits to 4171 proteins in 339 species: Archae - 11; Bacteria - 167; Metazoa - 1152; Fungi - 762; Plants - 1618; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0814eggNOG:KOG1303EMBL:AC008113EMBL:AC011020EMBL:CP002684EMBL:DQ446407EMBL:DQ652920
EnsemblPlants:AT1G67640EnsemblPlants:AT1G67640.1entrez:843088GeneID:843088Genevisible:Q9SR44GO:GO:0005886GO:GO:0006865
GO:GO:0016021Gramene:AT1G67640.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF235HOGENOM:HOG000241295InParanoid:Q9SR44InterPro:IPR013057
KEGG:ath:AT1G67640OMA:CIMWLCIPaxDb:Q9SR44Pfam:PF01490Pfam:Q9SR44PhylomeDB:Q9SR44PRIDE:Q9SR44
PRO:PR:Q9SR44ProteinModelPortal:Q9SR44Proteomes:UP000006548RefSeq:NP_176932.1STRING:3702.AT1G67640.1TAIR:AT1G67640TMHMM:TMhelix
UniGene:At.52423UniProt:Q9SR44
Coordinates (TAIR10) chr1:-:25352128..25353908
Molecular Weight (calculated) 49423.20 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.55
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKSQSSPTK DASTKQKNVD DWLPITSSRN AKWWYSAFHN VTAMVGAGVL SLPYAMSNLG WGPGVTIMIM SWLITFYTLW QMVQMHEMVP GKRFDRYHEL
101: GQHAFGEKLG LWIVVPQQLI VEVGVDIVYM VTGGKSLKKI HDLLCTDCKN IRTTYWIMIF ASIHFVLAHL PNFNSISIVS LAAAVMSLSY STIAWATSVK
201: KGVHPNVDYS SRASTTSGNV FNFLNALGDV AFAYAGHNVV LEIQATIPST PEKPSKIAMW KGVVVAYIVV AICYFPVAFV CYYIFGNSVD DNILMTLEKP
301: IWLIAIANAF VVVHVIGSYQ IYAMPVFDML ETFLVKKMMF APSFKLRFIT RTLYVAFTMF VAICIPFFGG LLGFFGGFAF APTTYYLPCI MWLCIKKPKK
401: YGLSWCINWF CIVVGVILTI LAPIGGLRTI IISAKNYEFF S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)