AT1G67640.1
Subcellular Consensus
(Prediction and Experimental) ![]() .
SUBAcon:vacuole 0.433 plasma membrane 0.309 What is SUBAcon? What is ASURE? SUBAcon computations |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine histidine transporter 2 (TAIR:AT1G24400.1); Has 4178 Blast hits to 4171 proteins in 339 species: Archae - 11; Bacteria - 167; Metazoa - 1152; Fungi - 762; Plants - 1618; Viruses - 0; Other Eukaryotes - 468 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:25352128..25353908 | ||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49423.20 Da | ||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 9.19 | ||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.55 | ||||||||||||||||||||||||||||||||||||||||||
Length | 441 amino acids | ||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MEKSQSSPTK DASTKQKNVD DWLPITSSRN AKWWYSAFHN VTAMVGAGVL SLPYAMSNLG WGPGVTIMIM SWLITFYTLW QMVQMHEMVP GKRFDRYHEL 101: GQHAFGEKLG LWIVVPQQLI VEVGVDIVYM VTGGKSLKKI HDLLCTDCKN IRTTYWIMIF ASIHFVLAHL PNFNSISIVS LAAAVMSLSY STIAWATSVK 201: KGVHPNVDYS SRASTTSGNV FNFLNALGDV AFAYAGHNVV LEIQATIPST PEKPSKIAMW KGVVVAYIVV AICYFPVAFV CYYIFGNSVD DNILMTLEKP 301: IWLIAIANAF VVVHVIGSYQ IYAMPVFDML ETFLVKKMMF APSFKLRFIT RTLYVAFTMF VAICIPFFGG LLGFFGGFAF APTTYYLPCI MWLCIKKPKK 401: YGLSWCINWF CIVVGVILTI LAPIGGLRTI IISAKNYEFF S |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)