suba logo
AT1G65210.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.772
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Galactose-binding protein; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT4G38030.1); Has 208 Blast hits to 151 proteins in 22 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 192; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC007230EMBL:CP002684EnsemblPlants:AT1G65210EnsemblPlants:AT1G65210.1entrez:842828Gene3D:2.60.120.260GeneID:842828
Gramene:AT1G65210.1hmmpanther:PTHR32018hmmpanther:PTHR32018:SF6InterPro:IPR008979InterPro:IPR010325InterPro:IPR029411KEGG:ath:AT1G65210
OMA:PHQRAREPfam:PF06045Pfam:PF14683PhylomeDB:Q9S9K1PIR:B96676Proteomes:UP000006548RefSeq:NP_176700.1
STRING:3702.AT1G65210.1SUPFAM:SSF49785TAIR:AT1G65210UniGene:At.66104UniProt:Q9S9K1
Coordinates (TAIR10) chr1:+:24224812..24225815
Molecular Weight (calculated) 28635.00 Da
IEP (calculated) 10.06
GRAVY (calculated) -0.56
Length 248 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKPIRNLDG PSGRAPTVQQ IRNKHGTREV IVDNGIISVS FSSPQGLITG IKYKGVNNVL HPHQRAREYF VPEPYKNTMN PLYLNHTDKF RQYGLWQRYT
101: ELYPNHDLIY TIGVSNYSKD WFYSQVTRKI GDSTYTPTTW QTVFHLPYVN MRGSYTLQLA LASAAWANLQ VRFNNEYTRP FFSTGYIGRD NAIARHGIHG
201: LYRLYSINVP GRLLRTGTNT IYLRQAKASG PLEGVMYDYI RLEEPSRE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)