AT1G59550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.988 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UBX domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
UBX domain-containing protein; CONTAINS InterPro DOMAIN/s: UBX (InterPro:IPR001012); BEST Arabidopsis thaliana protein match is: structural constituent of ribosome (TAIR:AT4G14250.1); Has 281 Blast hits to 255 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 69; Plants - 102; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:21879649..21880788 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34616.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.90 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 307 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESNYQRTLV SAFLNISVDQ TVETAIKCLK STNWKLEDAI NLLFAIDRMR NNQTLTLKPS DSTRLPSLSP PPPLNLLFNG SFEDAKLASS SKDLWLLVHI 101: QSETEFPCNT FNRDLWSNED VSQALEFRGE IKAKGFLKDL KKYIDASPHE HIASTARNMR VKAEKICHSD QQDMGNLSSD SVVVSSCGRE FDDVVTLSED 201: EEETCLSSDL FEFPVLTKEP KGDCDRSVVC SISVRFPNGR RKQRKFLKSE PVQLLWSFCY SHMDESDNKA FKLVQAIPGA SKTLDYGAEA SFDQYGIANS 301: IISVTWE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)