AT1G58190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.542 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : receptor like protein 9 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
receptor like protein 9 (RLP9); INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 56 (TAIR:AT5G49290.1); Has 228906 Blast hits to 34132 proteins in 1230 species: Archae - 113; Bacteria - 14890; Metazoa - 57611; Fungi - 2795; Plants - 136156; Viruses - 105; Other Eukaryotes - 17236 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:21540720..21544330 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 105695.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.42 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.00 | ||||||||||||||||||||||||||||||||||||
| Length | 932 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLIFTIPQFF FAAWVMVVSL QMQGYISCIE KERKGLLELK AYVNKEYSYD WSNDTKSDCC RWERVECDRT SGRVIGLFLN QTFSDPILIN LSLFHPFEEL 101: RTLNLYDFGC TGWFDDIHGY KSLGKLKKLE ILDMGNNEVN NSVLPFLNAA SSLRTLILHG NNMEGTFPMK ELKDLSNLEL LDLSGNLLNG PVPGLAVLHK 201: LHALDLSDNT FSGSLGREGL CQLKNLQELD LSQNEFTGPF PQCFSSLTQL QVLDMSSNQF NGTLPSVISN LDSLEYLSLS DNKFEGFFSF DLIANLSKLK 301: VFKLSSKSSL LHIESEISLQ LKFRLSVIDL KYCNLEAVPS FLQQQKDLRL INLSNNKLTG ISPSWFLENY PKLRVLLLWN NSFTIFHLPR LLVHSLHVLD 401: LSVNKFDEWL PNNIGHVLPN ISHLNLSNNG FQGNLPSSFS EMKKIFFLDL SHNNLSGSLP KKFCIGCSSL SILKLSYNRF SGKIFPQPMK LESLRVLIAD 501: NNQFTEITDV LIHSKGLVFL ELSNNSLQGV IPSWFGGFYF LYLSVSDNLL NGTIPSTLFN VSFQLLDLSR NKFSGNLPSH FSFRHMGLLY LHDNEFSGPV 601: PSTLLENVML LDLRNNKLSG TIPRFVSNRY FLYLLLRGNA LTGHIPTSLC ELKSIRVLDL ANNRLNGSIP PCLNNVSFGR SLDYEIDPDF GSSYGMVRAD 701: QELEESYSRS LVLPLEFELD YSGYLDFTVE FASKRRYDSY MGESFKFMFG LDFSSNELIG EIPRELGDFQ RIRALNLSHN SLSGLVPESF SNLTDIESID 801: LSFNVLHGPI PHDLTKLDYI VVFNVSYNNL SGLIPSQGKF LSLDVTNYIG NPFLCGTTIN KSCDDNTSGF KEIDSHSGDD ETAIDMETFY WSLFATYGIT 901: WMAFIVFLCF DSPWRQAWFR LVNVFVSFLK CV |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)