AT1G52120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT1G52130.1); Has 1455 Blast hits to 704 proteins in 37 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 1447; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19396200..19397857 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50911.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.92 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||||||||||||||
| Length | 459 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSQDSNALEM IQNEGPKWDD GFDHDDVTKI YLVGGKTGID FIKIDYVKSG KPKNGPFHGY SGGGFLQMFE IDNLKNEYLE SVEGYYTNRS GEFIGAIQFK 101: TNLRVSEIIG YSYWGLKKFK LAKHGNKIIG FQGSAEYRLK DLDAYFTPIT PTRMEAQGGN GGTKWDDGGD HDSVTKIQVR INKEGIQYIK FNYVDKDGDP 201: EKEQLHGSET GRGYTLEPFE INHSDKEYLL SIDGCYDEDS GVIQSLQLKT NIKTSEVMGD DEKGTKFTLG CNGHEIIGFH GSAQDNLNAL GAYITTLTLT 301: KLEYIGEGSD IWDDGTFEGV KKVSFYHNDG IVRCIEFDYV KDGKIETRVQ GGKRGTGDFT KEEFTVDYPN EFLTSVEGTY RDNPGGTLIT SLTFKTSNNR 401: TSPILGKASN KTFLLESKGC ALVGFHGASS DFFLYALGAY SFPMTSLAEA GRGAIHTSW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)