AT1G52110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Mannose-binding lectin superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: Mannose-binding lectin superfamily protein (TAIR:AT5G49870.1); Has 1710 Blast hits to 593 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1709; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19386789..19389740 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68343.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||
| Length | 615 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYNYSRSPGF YAKKILKMSI KRMKKKNEMS SVVDLIKIGR NCPSAIVQSD VSLSSTIIGQ RFLSKIYVQY SPKGIQSIRF SYINSGKPID GSLHGQSDNT 101: YTQTFEINHL KHEHLESVEG YYTDDTGIQA LQFKTNLRIS EPMGYHDGCT KFILAIEGKK IIGFHGLSFE GRRVYSLGAY FTWITPTRIE AIGGKVGTKW 201: DDGVDHAGFT KIHVRSGPKG IQYIKFLYVD KYGHLKDGPI HGSISGKVEG YYNDHDESGV IQALRFKTNI KTSELMGSNT GKKFRLAASE MKIVGFHGYA 301: GKNLRSLGAY FTPITPTKLA WQGTALGTLW DHGAFQAVRK LSVFEIGGYI TCLGITYDND GKVEKRDHGM QDGYPGEEVE FVVDYPNEFI TSVVGTMSTD 401: RVASLTFKTS KGRTSQRFGD RTANLVEFVL ENKDCAIVGF HGWWTPSYLT ALGAYSFPMP LSPASEKLEA QGGDGGASWD DGGNFEGVRK ICIGTGEIGI 501: VSVKFLYEND THEIVVGDHH GNKNLIKHEE FELDYPGEYL TLVEGSYDIV PGSEETEVII MLMFTTNMRA SPCYGLDDNP SFVLQKRGHK IVGFHGKSSK 601: MLHQLGIHVL PITHP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)