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AT1G48750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G18280.1); Has 285 Blast hits to 284 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 285; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JFF4eggNOG:ENOG410YV7DEMBL:AY045879EMBL:AY091170EMBL:CP002684EnsemblPlants:AT1G48750EnsemblPlants:AT1G48750.1
entrez:841297GeneID:841297Gramene:AT1G48750.1hmmpanther:PTHR33214InterPro:IPR016140KEGG:ath:AT1G48750OMA:KSILRAC
Pfam:PF14368PhylomeDB:Q94AQ3Proteomes:UP000006548RefSeq:NP_564532.1SMART:SM00499SMR:Q94AQ3STRING:3702.AT1G48750.1
SUPFAM:SSF47699TAIR:AT1G48750TMHMM:TMhelixUniGene:At.56703UniGene:At.75142UniProt:Q94AQ3
Coordinates (TAIR10) chr1:+:18036019..18036303
Molecular Weight (calculated) 9936.33 Da
IEP (calculated) 8.59
GRAVY (calculated) 0.31
Length 94 amino acids
Sequence (TAIR10)
(BLAST)
1: MVKVMWVSVL ALAAAILLLT VPVAEGVTCS PMQLASCAAA MTSSSPPSEA CCTKLREQQP CLCGYMRNPT LRQYVSSPNA RKVSNSCKIP SPSC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)