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AT1G30660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nucleic acid binding;nucleic acid binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nucleic acid binding;nucleic acid binding; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: DNA modification, DNA metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Toprim domain, subgroup (InterPro:IPR006154), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: toprim domain-containing protein (TAIR:AT1G30680.1); Has 599 Blast hits to 599 proteins in 131 species: Archae - 0; Bacteria - 184; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 44; Other Eukaryotes - 315 (source: NCBI BLink).
Protein Annotations
EC:2.7.7.-EMBL:AC007060EMBL:CP002684EnsemblPlants:AT1G30660EnsemblPlants:AT1G30660.1entrez:839946GeneID:839946
Genevisible:F4I6E6GO:GO:0003697GO:GO:0016779GO:GO:0043139GO:GO:0046872Gramene:AT1G30660.1hmmpanther:PTHR12873
InParanoid:F4I6E6InterPro:IPR006171InterPro:IPR027032KEGG:ath:AT1G30660OMA:VGCKYRTPANTHER:PTHR12873PaxDb:F4I6E6
Pfam:F4I6E6Pfam:PF13662PIR:A86432PRIDE:F4I6E6PRO:PR:F4I6E6ProteinModelPortal:F4I6E6Proteomes:UP000006548
RefSeq:NP_174354.4SMART:SM00493SMR:F4I6E6SUPFAM:SSF56731TAIR:AT1G30660UniGene:At.51843UniProt:F4I6E6
Coordinates (TAIR10) chr1:+:10876853..10879017
Molecular Weight (calculated) 37809.30 Da
IEP (calculated) 5.93
GRAVY (calculated) -0.46
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MSENVPDHQS TNGFSSSDFF VPEEEAGKKV VLSKLVTLMR KLSEQGIDAQ NCPPGVRSCL ICPKCEVGDS GEKSLTLYIY PDGSSAKWTC RRKCGLKGVL
101: QVDGKLVSKD PIGKVERKIT VESIKLEPLC DEIQDFFAAR AISGKTLERN RVMQKRIDDE IVIAFTYWQR GELVSCKYRS LTKKFVQERN TRKILYGLDD
201: IEETSEIIIV EGEPDKLAME EAGFFNCVSV PDGAPETVSS KEIPSESKDT AFKYIWNCND YLKKASRIVI ATDGDGPGQA LAEELARRLG KERCWLVKWP
301: KKSEDEHFKD ANEVLMSKGP HLLKEAILNA EPYPLKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)