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AT1G28300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Transcription factor that contains a B3 domain, a DNA-binding motif unique to plants and characteristic of several transcription factors. Plays critical roles both early and late during embryo development. LEC2 RNA accumulates primarily during seed development. LEC2 is required for the maintenance of suspensor morphology, specification of cotyledon identity, progression through the maturation phase, and suppression of premature germination. It establishes a cellular environment sufficient to initiate embryo development - ectopic, postembryonic expression of LEC2 in transgenic plants induces the formation of somatic embryos and other organ-like structures and often confers embryonic characteristics to seedlings and to reproductive and vegetative organs of mature plants.
Computational
Description (TAIR10)
LEAFY COTYLEDON 2 (LEC2); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT3G26790.1); Has 515 Blast hits to 514 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 515; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JDJ2eggNOG:ENOG41116MGEMBL:AC021044EMBL:AF400123EMBL:AF400124EMBL:AJ630496EMBL:AY568668
EMBL:CP002684EMBL:DQ446296EMBL:DQ652865EnsemblPlants:AT1G28300EnsemblPlants:AT1G28300.1entrez:839724Gene3D:2.40.330.10
GeneID:839724Genevisible:Q1PFR7GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009793
GO:GO:0010262GO:GO:0010344GO:GO:0010431GO:GO:0010601GO:GO:0045893Gramene:AT1G28300.1hmmpanther:PTHR31140
hmmpanther:PTHR31140:SF7HOGENOM:HOG000113311InParanoid:Q1PFR7InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT1G28300OMA:GDFLTIY
PaxDb:Q1PFR7Pfam:PF02362Pfam:Q1PFR7Pfscan:PS50863PhylomeDB:Q1PFR7PIR:C86409PRIDE:Q1PFR7
PRO:PR:Q1PFR7PROSITE:PS50863ProteinModelPortal:Q1PFR7Proteomes:UP000006548RefSeq:NP_564304.1SMART:SM01019SMR:Q1PFR7
STRING:3702.AT1G28300.1SUPFAM:SSF101936TAIR:AT1G28300tair10-symbols:LEC2UniGene:At.26290UniProt:Q1PFR7
Coordinates (TAIR10) chr1:-:9897054..9899838
Molecular Weight (calculated) 41710.70 Da
IEP (calculated) 5.04
GRAVY (calculated) -0.82
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MDNFLPFPSS NANSVQELSM DPNNNRSHFT TVPTYDHHQA QPHHFLPPFS YPVEQMAAVM NPQPVYLSEC YPQIPVTQTG SEFGSLVGNP CLWQERGGFL
101: DPRMTKMARI NRKNAMMRSR NNSSPNSSPS ELVDSKRQLM MLNLKNNVQI SDKKDSYQQS TFDNKKLRVL CEKELKNSDV GSLGRIVLPK RDAEANLPKL
201: SDKEGIVVQM RDVFSMQSWS FKYKFWSNNK SRMYVLENTG EFVKQNGAEI GDFLTIYEDE SKNLYFAMNG NSGKQNEGRE NESRERNHYE EAMLDYIPRD
301: EEEASIAMLI GNLNDHYPIP NDLMDLTTDL QHHQATSSSM PPEDHAYVGS SDDQVSFNDF EWW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)