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AT1G20730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF833)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF833); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF833) (TAIR:AT1G20740.1); Has 432 Blast hits to 427 proteins in 156 species: Archae - 0; Bacteria - 238; Metazoa - 13; Fungi - 0; Plants - 127; Viruses - 2; Other Eukaryotes - 52 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3332eggNOG:KOG2342EMBL:CP002684EnsemblPlants:AT1G20730EnsemblPlants:AT1G20730.1entrez:838663GeneID:838663
Gramene:AT1G20730.1hmmpanther:PTHR17985hmmpanther:PTHR17985:SF13InParanoid:F4HUN5InterPro:IPR008551KEGG:ath:AT1G20730OMA:DSEVGHR
PANTHER:PTHR17985PaxDb:F4HUN5Pfam:PF05742PRIDE:F4HUN5ProteinModelPortal:F4HUN5Proteomes:UP000006548RefSeq:NP_173496.2
STRING:3702.AT1G20730.1TAIR:AT1G20730UniGene:At.41692UniProt:F4HUN5
Coordinates (TAIR10) chr1:+:7194256..7195400
Molecular Weight (calculated) 28995.20 Da
IEP (calculated) 4.66
GRAVY (calculated) -0.26
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIVAFQWGE GENILTLLQN RENWQSRSIG KAAWEWDESQ VLSGRCAETD GTWLGISIRG RVAFLVEAGP VNRDRIIGAE CRTLDFLKSN LSPEDFADSL
101: ALDSGRNTGI AYHLIVADIV SNSMFYIYKP SLSEDGMVYT EPVGPGVHTL SSAGLDSEVG HRDLRLKRYF SERINRELPE PISGLAEEVM YDTVEAINGD
201: PLSSIFVVDT LIENEHYGTR CTTALVVRRT MQVRFFERYR ARFNDDWNVH DFRFTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)