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AT1G18760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Zinc finger, C3HC4 type (RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger, C3HC4 type (RING finger) family protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G13228.1); Has 8667 Blast hits to 8640 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2366; Fungi - 656; Plants - 4333; Viruses - 89; Other Eukaryotes - 1223 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AC011809EMBL:CP002684EMBL:DQ086850EnsemblPlants:AT1G18760EnsemblPlants:AT1G18760.1
entrez:838458Gene3D:3.30.40.10GeneID:838458GO:GO:0008270Gramene:AT1G18760.1hmmpanther:PTHR22937hmmpanther:PTHR22937:SF18
HOGENOM:HOG000152571InterPro:IPR001841InterPro:IPR003903InterPro:IPR013083KEGG:ath:AT1G18760ncoils:CoilOMA:NANIDGY
Pfam:PF13639Pfscan:PS50089Pfscan:PS50330PhylomeDB:Q9M9U7PIR:E86321PROSITE:PS50089PROSITE:PS50330
Proteomes:UP000006548RefSeq:NP_173311.1SMART:SM00184SMR:Q9M9U7SUPFAM:SSF57850TAIR:AT1G18760UniGene:At.64831
UniProt:Q9M9U7
Coordinates (TAIR10) chr1:-:6471150..6471824
Molecular Weight (calculated) 26042.00 Da
IEP (calculated) 3.91
GRAVY (calculated) -0.55
Length 224 amino acids
Sequence (TAIR10)
(BLAST)
001: MRIDFYHNII RNHQPENAGT LSVNANIDGY DYTFTDTSFI EEFLNEENNQ FPTKQKLHYF LEDSELINDY DMEWGTAIFE LIFYVVAVTN PARGDYSPGD
101: DLLVSLLIFP NDEPIEEEYE IEEEDLSEEE DQIEEAVRAS LEETNNISLR PANKLVVNSL ARKIYKKTTS STERCTICLE EFNDGTKVMT LPCGHEFDDE
201: CVLTWFETNH DCPLCRFKLP CEDQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)