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AT1G15000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 50
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 50 (scpl50); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 47 (TAIR:AT5G22980.1); Has 3616 Blast hits to 3489 proteins in 407 species: Archae - 0; Bacteria - 288; Metazoa - 703; Fungi - 860; Plants - 1378; Viruses - 0; Other Eukaryotes - 387 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G15000-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AC012189EMBL:AY075612EMBL:BT002620EMBL:CP002684
EnsemblPlants:AT1G15000EnsemblPlants:AT1G15000.1entrez:838065ESTHER:arath-SCP50
Gene3D:3.40.50.1820GeneID:838065Genevisible:Q9M9Q6GO:GO:0004185
GO:GO:0005576GO:GO:0005773Gramene:AT1G15000.1hmmpanther:PTHR11802
hmmpanther:PTHR11802:SF58HOGENOM:HOG000238094InterPro:IPR001563InterPro:IPR029058
InterPro:IPR033124KEGG:ath:AT1G15000KO:K09645MEROPS:S10.003
OMA:WEGIGKFPANTHER:PTHR11802PaxDb:Q9M9Q6Pfam:PF00450
Pfam:Q9M9Q6PhylomeDB:Q9M9Q6PIR:D86283PRIDE:Q9M9Q6
PRINTS:PR00724PRO:PR:Q9M9Q6PROSITE:PS00560ProteinModelPortal:Q9M9Q6
Proteomes:UP000006548RefSeq:NP_172953.1scanprosite:PS00560SMR:Q9M9Q6
STRING:3702.AT1G15000.1SUPFAM:SSF53474TAIR:AT1G15000tair10-symbols:scpl50
UniGene:At.41945UniProt:Q9M9Q6
Coordinates (TAIR10) chr1:+:5168613..5169947
Molecular Weight (calculated) 49224.90 Da
IEP (calculated) 5.19
GRAVY (calculated) -0.13
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MEQATTLFIL LSTLLLAVSV ESPQPPLFPD EALPTKSGYL PVKPAPGSSM FYAFYEAQEP TTPLPDTPLL VWLQGGPGCS SMIGNFYELG PWRVVSRATD
101: LERNPGAWNR LFGLLFVDNP IGVGFSIAAS QQDIPTNQRQ VAEHLYAALV EFLEQNPSFE NRPVYFTGES YAGKYVPAIG YYILKEKPNG KVNLKGLAIG
201: NGLTDPVTQV QTHAVNVYYS GLVNAKQRVE LQKAQEISVA LVKSQKWREA ADARTELLTL LSNMTGLATL YNTARAIPYR TDLVVDLLNQ REAKRVLGVS
301: ETVRFEECSD EVEDVLRADV MKSVKFMVEY ALERTQVLLY QGMLDLRDGV VSTEEWMKTM NWSGLGMFST AERRVWKDED GVVAGYVQRW GNLCHVAVTG
401: AGHFVPTDKA VNSRDMIEGW VLGKGLFGGK DVKQTTSSSL YHSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)