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AT1G05920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Domain of unknown function (DUF313)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF313 (InterPro:IPR005508), Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF313) (TAIR:AT3G24850.1); Has 196 Blast hits to 185 proteins in 22 species: Archae - 0; Bacteria - 7; Metazoa - 15; Fungi - 10; Plants - 139; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JS2XeggNOG:ENOG4111BM9EMBL:AB493436EMBL:AC009999EMBL:AY800566EMBL:AY803489EMBL:CP002684
EnsemblPlants:AT1G05920EnsemblPlants:AT1G05920.1entrez:837102Gene3D:2.40.330.10GeneID:837102Genevisible:Q5RM09GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT1G05920.1hmmpanther:PTHR31541hmmpanther:PTHR31541:SF22HOGENOM:HOG000155106
InParanoid:Q5RM09InterPro:IPR003340InterPro:IPR005508InterPro:IPR015300iPTMnet:Q5RM09KEGG:ath:AT1G05920OMA:MSSRDNQ
PaxDb:Q5RM09Pfam:PF03754Pfam:Q5RM09Pfscan:PS50863PhylomeDB:Q5RM09PIR:C86194PRIDE:Q5RM09
PRO:PR:Q5RM09PROSITE:PS50863ProteinModelPortal:Q5RM09Proteomes:UP000006548RefSeq:NP_172083.1SUPFAM:SSF101936TAIR:AT1G05920
UniGene:At.51162UniProt:Q5RM09
Coordinates (TAIR10) chr1:+:1797044..1797991
Molecular Weight (calculated) 36478.50 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.93
Length 315 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSRDKPKTF AEVREEICKR REEMISRDNQ KKTKTVAQVR EEKGKRREEM ISRYNQKKAK TVAQVKEGKG KRREEMISRD NRTKPKTVAQ VRDAKRKRTF
101: DHVPRGTREP HAYLRNDPAP QVASVPKSVP EEKDVILDRI LSNVPRRKKT TSYEFVPPKH PQEPQWLLQV MSRMNGAGDP KLIIEKNLDS NDVDPRQNRL
201: SIPINTVIQN DFLTLDESRL IDEDEITNEG NMGVAAFLVD QRTKKWNMGF KQWFMTTDSG SSYWSFVLRG EWSNVVETNG LKEGDKISLW SFRSNDILCF
301: ALVPPTSSVV ESLDK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)