AT1G05090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : dentin sialophosphoprotein-related | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
dentin sialophosphoprotein-related; BEST Arabidopsis thaliana protein match is: dentin sialophosphoprotein-related (TAIR:AT4G20720.1); Has 3598 Blast hits to 1413 proteins in 251 species: Archae - 2; Bacteria - 2631; Metazoa - 338; Fungi - 185; Plants - 102; Viruses - 1; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:1463202..1465622 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 77266.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.12 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.79 | ||||||||||||||||||||||||
| Length | 706 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAMEISVDLI NQLKVSLRKE AKLTSVDDCS DSSFPSLPTS EEAIAELDAS APYLRCRNCK GKLLRGIESL ICVFCGNQQR TSDNPPDPIK FTSTSAYKWF 101: LTSLNLDGSE MVEPLKETDG SSRGATKAPP SKGIALSKFL DLEIQWSALE EKSDDGQSVQ KKNPLNLGGI NLDDYFVERR GDLSKVEQAE SKPVEDDDFK 201: DPRSLSLFDS VKSQGVVGSQ QHDNVGLFDK KDAPKSVVSS GEHENLSLFA GRDAQEKDEN LSLFEGKEDA QRTSSSKVDE SFGFFEGKDA QRTSSSKDDE 301: SFGMFEGKKD AQRNSSSKED ESFGMFEGKE DAQRNSSSKE NENFGFFEGA PLSNADLKSF DDKIVAASSD WDSDFQSADQ NLSQKKIDGD PFVSSPVDLA 401: AHMDSVFGSG KDLLYAQPAD SSTAYVSKAG DWLQDDLFGN VTGEAQTNDS AVHDKNEGQI VGGNGNSSMD IDWIGDDLWQ TNEKKSIEKT PTDVNDDDDD 501: DWNDFASSAN SKTPNNPLSQ TMESSQFEIF YGHAQDKNGV KEQSVDEKQN TDTSVMSDIG KCQEDDLFGT WDSFTSSTIL QTSLQPPTIH ANPSGEKNPE 601: MNLFGENNNN RDLDFDSISR SDFFSESSGG KTNSEEVKVI PSGTSTLDRP SDPDGSKDQT VDLVVGTTTT VPKSMSDVAE ELMSQMHDLS FMLETKLSVP 701: PISKTE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)