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AT5G62990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1692 (emb1692); CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G01037.1); Has 538 Blast hits to 532 proteins in 58 species: Archae - 0; Bacteria - 4; Metazoa - 48; Fungi - 18; Plants - 406; Viruses - 7; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IUR3eggNOG:ENOG410YF7SEMBL:AB009051EMBL:CP002688
EMBL:DQ447107EnsemblPlants:AT5G62990EnsemblPlants:AT5G62990.1entrez:836419
GeneID:836419GO:GO:0016787Gramene:AT5G62990.1hmmpanther:PTHR31476
hmmpanther:PTHR31476:SF2HOGENOM:HOG000115856InterPro:IPR021099KEGG:ath:AT5G62990
OMA:FRLFQAPPfam:PF11955PhylomeDB:Q9FM53Proteomes:UP000006548
RefSeq:NP_201104.1STRING:3702.AT5G62990.1TAIR:AT5G62990tair10-symbols:emb1692
UniGene:At.55687UniProt:Q9FM53
Coordinates (TAIR10) chr5:+:25277828..25279312
Molecular Weight (calculated) 56791.20 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.46
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMALTQLVP SSPEKLFCFS SFFLPSIPLE IRRSNVTTKT SSKKLGSLSL NISCSAHKIV RSPSLDRHVV KQNRVRFVQK LNTLLLSKPK HYIPIEILYK
101: CRSYLCIENP LAILSMIRRY PTIFELFTTP TPHLPMNATK PLSQLCVRLT SAASSLAMQE LNLKSEISDK LATKLQKLLM LSSHRRLLLS KLVHIAPDFG
201: FPPNFRSRLC NDYPDKFKTV DTSYGRALEL VSSDPELANQ MPSPEVDRGL IVDRPLKFKR LNLRRGLNLK RRHQGFLIKF RESPDVCPYK MSSDYLASES
301: IEAEKRACAV VREVLGLTVE KRTLIDHLTH FRKEFSLPNK LRDLIVRHPE LFYVSIKGMR DSVFLVEAYN DNGDLLDKDE RLVIRERLID LIQEGKRIRR
401: ERRRKGATLG DKSVEEKRKD DETIDDYDSD LDDEYEDGFE NLFDSEDLGV EYHFDEEDDD DEAGVNGESV EYWSRKLSSS GSSSDEANSA VESW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)