AT3G23020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G73710.1); Has 56373 Blast hits to 14756 proteins in 361 species: Archae - 8; Bacteria - 288; Metazoa - 580; Fungi - 796; Plants - 52865; Viruses - 0; Other Eukaryotes - 1836 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8177215..8179743 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 95324.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.96 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 842 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLNLRLDGS SLHVLCSTKT LPISSPLDKF PSFKKLKQNY VPGTHESDKG PQRSTRNGDR GCGTVAHEVV AGKNLLLVNP SNGCVGKSGI IDGFVDKRSK 101: DARFGGNGLV SEVHTKCSTK RLSYGGCIPA ILEALDSIED VEDALSPWAE RLSNKERTII LKEQIHWERA VEIFEWFKSK GCYELNVIHY NIMLRILGKA 201: CKWRYVQSLW DEMIRKGIKP INSTYGTLID VYSKGGLKVH ALCWLGKMSK IGMQPDEVTT GIVLQMYKKA REFQKAEEFF KKWSCDENKA DSHVCLSSYT 301: YNTMIDTYGK SGQIKEASET FKRMLEEGIV PTTVTFNTMI HIYGNNGQLG EVTSLMKTMK LHCAPDTRTY NILISLHTKN NDIERAGAYF KEMKDDGLKP 401: DPVSYRTLLY AFSIRHMVEE AEGLIAEMDD DNVEIDEYTQ SALTRMYVEA EMLEKSWSWF KRFHVAGNMS SEGYSANIDA YGERGYLSEA ERVFICCQEV 501: NKRTVIEYNV MIKAYGISKS CEKACELFES MMSYGVTPDK CTYNTLVQIL ASADMPHKGR CYLEKMRETG YVSDCIPYCA VISSFVKLGQ LNMAEEVYKE 601: MVEYNIEPDV VVYGVLINAF ADTGNVQQAM SYVEAMKEAG IPGNSVIYNS LIKLYTKVGY LDEAEAIYRK LLQSCNKTQY PDVYTSNCMI NLYSERSMVR 701: KAEAIFDSMK QRGEANEFTF AMMLCMYKKN GRFEEATQIA KQMREMKILT DPLSYNSVLG LFALDGRFKE AVETFKEMVS SGIQPDDSTF KSLGTILMKL 801: GMSKKAVRKI EEIRKKEIKR GLELWISTLS SLVGIGDCVD EL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)