AT5G41040.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.769 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HXXXD-type acyl-transferase family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a feruloyl-CoA transferase required for suberin synthesis. Has feruloyl-CoA-dependent feruloyl transferase activity towards substrates with a primary alcohol. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
HXXXD-type acyl-transferase family protein; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT5G63560.1); Has 2970 Blast hits to 2949 proteins in 200 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 233; Plants - 2727; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16431448..16433086 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50960.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.56 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 457 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVAENNKNKD VTLSASMDNN NNNIKGTNIH LEVHQKEPAL VKPESETRKG LYFLSNLDQN IAVIVRTIYC FKSEERGNEE AVQVIKKALS QVLVHYYPLA 101: GRLTISPEGK LTVDCTEEGV VFVEAEANCK MDEIGDITKP DPETLGKLVY DVVDAKNILE IPPVTAQVTK FKCGGFVLGL CMNHCMFDGI GAMEFVNSWG 201: QVARGLPLTT PPFSDRTILN ARNPPKIENL HQEFEEIEDK SNINSLYTKE PTLYRSFCFD PEKIKKLKLQ ATENSESLLG NSCTSFEALS AFVWRARTKS 301: LKMLSDQKTK LLFAVDGRAK FEPQLPKGYF GNGIVLTNSI CEAGELIEKP LSFAVGLVRE AIKMVTDGYM RSAIDYFEVT RARPSLSSTL LITTWSRLGF 401: HTTDFGWGEP ILSGPVALPE KEVTLFLSHG EQRRSINVLL GLPATAMDVF QEQFLQI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)