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AT5G13900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4K8eggNOG:ENOG41116TKEMBL:AB005230EMBL:AF463514
EMBL:AK175242EMBL:BT015106EMBL:CP002688EnsemblPlants:AT5G13900
EnsemblPlants:AT5G13900.1entrez:831237GeneID:831237Genevisible:Q9FFY3
GO:GO:0006810GO:GO:0008289GO:GO:0031225Gramene:AT5G13900.1
hmmpanther:PTHR33044hmmpanther:PTHR33044:SF29HOGENOM:HOG000093095InterPro:IPR016140
KEGG:ath:AT5G13900OMA:IRKMPECPaxDb:Q9FFY3Pfam:PF14368
Pfam:Q9FFY3PhylomeDB:Q9FFY3PRIDE:Q9FFY3PRO:PR:Q9FFY3
ProteinModelPortal:Q9FFY3Proteomes:UP000006548RefSeq:NP_196894.1SMR:Q9FFY3
STRING:3702.AT5G13900.1SUPFAM:SSF47699TAIR:AT5G13900UniGene:At.32005
UniProt:Q9FFY3
Coordinates (TAIR10) chr5:-:4481346..4481876
Molecular Weight (calculated) 16533.10 Da
IEP (calculated) 8.50
GRAVY (calculated) 0.07
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MMMGMKFFSF YVVLLLVAAS SGMRINGQSV SCLNQLAPCL NYLNGTKEVP QVCCNPLKSV IRNNPECLCR MISNRWSSQA ERAGIDVNDA QMLPARCGEH
101: VNPIACLTRS RGGSTNSDRS SSIGNTFSQS YWMTTLAIAA TVLSYCHHII S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)