AT5G09530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G09520.1); Has 56710 Blast hits to 18930 proteins in 1860 species: Archae - 251; Bacteria - 17598; Metazoa - 17723; Fungi - 4561; Plants - 6151; Viruses - 953; Other Eukaryotes - 9473 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2960080..2961192 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 41611.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.87 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||
| Length | 370 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALMKKSLSA ALLSSPLLII CLIALLADPF SVGARRLLED PKPEIPKLPE LPKFEVPKLP EFPKPELPKL PEFPKPELPK IPEIPKPELP KVPEIPKPEE 101: TKLPDIPKLE LPKFPEIPKP ELPKMPEIPK PELPKVPEIQ KPELPKMPEI PKPELPKFPE IPKPDLPKFP ENSKPEVPKL METEKPEAPK VPEIPKPELP 201: KLPEVPKLEA PKVPEIQKPE LPKMPELPKM PEIQKPELPK LPEVPKLEAP KVPEIQKPEL PKMPELPKMP EIQKPELPKM PEIQKPELPK VPEVPKPELP 301: TVPEVPKSEA PKFPEIPKPE LPKIPEVPKP ELPKVPEITK PAVPEIPKPE LPTMPQLPKL PEFPKVPGTP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)