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AT5G13580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ABC-2 type transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ABC-2 type transporter family protein; FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: response to nematode; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC-2 type transporter (InterPro:IPR013525), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC-2 type transporter family protein (TAIR:AT3G55090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:16480eggNOG:COG1131eggNOG:KOG0061EMBL:AB006704
EMBL:BT003884EMBL:BT004956EMBL:CP002688EnsemblPlants:AT5G13580
EnsemblPlants:AT5G13580.1entrez:831202Gene3D:3.40.50.300GeneID:831202
Genevisible:Q9FNB5GO:GO:0005524GO:GO:0005886GO:GO:0009624
GO:GO:0010345GO:GO:0016021GO:GO:0042626GO:GO:0055085
Gramene:AT5G13580.1hmmpanther:PTHR19241hmmpanther:PTHR19241:SF180HOGENOM:HOG000238446
InParanoid:Q9FNB5InterPro:IPR003439InterPro:IPR003593InterPro:IPR013525
InterPro:IPR017871InterPro:IPR027417iPTMnet:Q9FNB5KEGG:ath:AT5G13580
ncoils:CoilOMA:FWVELLVPaxDb:Q9FNB5Pfam:PF00005
Pfam:PF01061Pfam:Q9FNB5Pfscan:PS50893PhylomeDB:Q9FNB5
PRIDE:Q9FNB5PRO:PR:Q9FNB5PROSITE:PS00211PROSITE:PS50893
ProteinModelPortal:Q9FNB5Proteomes:UP000006548RefSeq:NP_196862.1scanprosite:PS00211
SMART:SM00382SMR:Q9FNB5STRING:3702.AT5G13580.1SUPFAM:SSF52540
TAIR:AT5G13580TMHMM:TMhelixUniGene:At.32050UniProt:Q9FNB5
Coordinates (TAIR10) chr5:+:4370879..4373062
Molecular Weight (calculated) 80305.50 Da
IEP (calculated) 10.06
GRAVY (calculated) 0.16
Length 727 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRVVAADDN MALPFFSPEF GNVSGASSSP TTFAQLLQNV DDSTRRSHHQ HHVDVDLASP DQSVPFVLSF TDLTYSVKVR RKFTWRRSVS SDPGAPSEGI
101: FSSKTKTLLN GITGEARDGE ILAVLGASGS GKSTLIDALA NRIAKGSLKG NVTLNGEVLN SKMQKAISAY VMQDDLLFPM LTVEETLMFA AEFRLPRSLS
201: KSKKSLRVQA LIDQLGLRNA ANTVIGDEGH RGISGGERRR VSIGIDIIHD PILLFLDEPT SGLDSTSALS VIKVLKRIAQ SGSMVIMTLH QPSYRLLRLL
301: DRLLFLSRGQ TVFSGSPAML PRFFAEFGHP IPEHENRTEF ALDLIRELEG SAGGTRSLVE FNKGFRQRKA EPRSQTGLSL KEAISASISK GKLVSGATTT
401: THSSGSSPVS TIPTFANPFW VELAVLAKRS MTNSRRQPEL FGIRLGAVLV TGFILATMFW QLDNSPKGVQ ERLGCFAFAM STTFYTCADA LPVFLQERFI
501: FMRETAYNAY RRSSYVLSHS LVALPSLIIL SLAFAAITFW GVGLDGGLMG FLFYFLVILA SFWAGSSFVT FLSGVVPHVM LGYTIVVAIL AYFLLFSGFF
601: INRDRIPGYW IWFHYISLVK YPYEAVLLNE FGDPTKCFVR GVQIFDNTPL VAVPQGMKVR LLATMSKSLG MRITSSTCLT TGYDILQQQG VTDLTKWNCL
701: WVTVAWGFFF RILFYFSLLL GSKNKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)