AT5G01230.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity, nucleic acid binding; INVOLVED IN: methylation, rRNA methylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA methyltransferase J (InterPro:IPR015507), Ribosomal RNA methyltransferase RrmJ/FtsJ (InterPro:IPR002877); BEST Arabidopsis thaliana protein match is: FtsJ-like methyltransferase family protein (TAIR:AT4G25730.1); Has 5711 Blast hits to 5669 proteins in 1418 species: Archae - 154; Bacteria - 2315; Metazoa - 596; Fungi - 413; Plants - 124; Viruses - 65; Other Eukaryotes - 2044 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:92789..95380 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33996.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 309 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKASRDKRD IYYRKAKEEG WRARSAFKLL QIDEEFNIFE GVKRVVDLCA APGSWSQVLS RQLYLPAKSS AESKDGDLPL IVAIDLQPMA PIEGVIQVQG 101: DITNARTAEV VIRHFDGCKA DLVVCDGAPD VTGLHDMDEF VQSQLILAGL TIVTHILKEG GKFIAKIFRG KDTSLLYCQL KLFFPTVTFA KPKSSRNSSI 201: EAFAVCENYS PPEGFNPRDL HRLLEKVGSP SGGSDLDCSS GWLEGPNKVY IPFLACGDLT GYDSDRSYPL PREADGSSYQ SLDPIQPPIA PPYKRALELK 301: KASAQSFNS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)