AT4G39952.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G03580.1); Has 47712 Blast hits to 13890 proteins in 262 species: Archae - 2; Bacteria - 17; Metazoa - 157; Fungi - 156; Plants - 46708; Viruses - 0; Other Eukaryotes - 672 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:18527680..18530007 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85832.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.65 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||||||||||||||
| Length | 775 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLRRLLKPNL VVTLRKLSSS SASYVDRHIS VILCDQSLSL ESLRKHNALI ITGGLSENIF VASKLISSYA SYGKPNLSSR VFHLVTRRDI FLWNSIIKAH 101: FSNGDYARSL CFFFSMLLSG QSPDHFTAPM VVSACAELLW FHVGTFVHGL VLKHGGFDRN TAVGASFVYF YSKCGFLQDA CLVFDEMPDR DVVAWTAIIS 201: GHVQNGESEG GLGYLCKMHS AGSDVDKPNP RTLECGFQAC SNLGALKEGR CLHGFAVKNG LASSKFVQSS MFSFYSKSGN PSEAYLSFRE LGDEDMFSWT 301: SIIASLARSG DMEESFDMFW EMQNKGMHPD GVVISCLINE LGKMMLVPQG KAFHGFVIRH CFSLDSTVCN SLLSMYCKFE LLSVAEKLFC RISEEGNKEA 401: WNTMLKGYGK MKCHVKCIEL FRKIQNLGIE IDSASATSVI SSCSHIGAVL LGKSLHCYVV KTSLDLTISV VNSLIDLYGK MGDLTVAWRM FCEADTNVIT 501: WNAMIASYVH CEQSEKAIAL FDRMVSENFK PSSITLVTLL MACVNTGSLE RGQMIHRYIT ETEHEMNLSL SAALIDMYAK CGHLEKSREL FDAGNQKDAV 601: CWNVMISGYG MHGDVESAIA LFDQMEESDV KPTGPTFLAL LSACTHAGLV EQGKKLFLKM HQYDVKPNLK HYSCLVDLLS RSGNLEEAES TVMSMPFSPD 701: GVIWGTLLSS CMTHGEFEMG IRMAERAVAS DPQNDGYYIM LANMYSAAGK WEEAERAREM MRESGVGKRA GHSVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)