AT5G49110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19900203..19905925 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 164236.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.93 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.10 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1469 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MTVAAAAEEP SQRPLTDKDI IRLAQYHHCQ TGFSLPPYLL SPSSHDSLLS YLKSRSSSPS PSKQVSEYVI ALLSLISLSP TTPSLCSLLA SLLISYTQIF 0101: NSCKIPSDSD SLKTIQLFGT LLRYLHVKEV KSVVDSILSG VTRVITVDEA QVFDLLPVCF DLLRREGKAS EIDFVNSAID RVLSCEWNKA LLTKMVSLAK 0201: EFSFLDKGRK SELVEKVFVG IKLIDLQDLP SLVYQLLVLA SKGFCKREVI GGVVGYFGSK AETRVASVVR QIEGTVLLHV NFAVKQDPSL GQEVVALVKS 0301: DLRAFNHFTV AVLFSVARVR KFGESSLGML RTALLTAYND YRLSKDCKWL PVELKEESFL HAKLVEKSLL RAVSECRYGR EHVVPSVIQF GFMLLESVEE 0401: GRSNEFGDSK GVLGIEKLSI QILGTLFEVH DMTRNEIIEQ CKFRILSLKC AKSKPIVRLL GYLVQRYSLI MLEFVHHLKE LLDYFTFMEG HISCFLVSAV 0501: IPLIKFSRDL QDYTILVIRK AMFRREDTVR VAATKVITDL ILAEKLAKRD SSFTFQDSAS QASSSQQTEM SCIVRGNLFT ELNGLLQRCL YQQARVKEVV 0601: YDGLVKLVLI DPSSGGHVLD FLMPHFLRFF GQDTDFQLGI TSCIRVEGDK FTIEEPLDRL LFCVSWILLL QQQNSSDRPS DAAWPCFGFS LSQDNEQVGR 0701: NLSHEAYSSA LVKIRSFLLG KKLGDIVGQS QDTVSASLEE DKRKSYCLII LGIVQVLLNY IIVDLEKQPE GKKGSVRKEI VDLIDLYESL EKDVGKSKQS 0801: NVGKRVRFSA CNDTDLGNTS INEEREKVPF LATSSIYQLF LLSFKLYSSK SVGTQSGSQD HSHSSPAKTE KSIFSFTLHV CVGHINSSLC MKEENPLKPL 0901: VCGDMKVLGP PLLKVVYLLK PEPPLATGQT NKEKKGRKDV DGRKQCLHLA LLSLKELLNI YSSGSGLTGL LEDLLAVPAS EDATLEECRE ASKIEDPLIK 1001: SIEIFMAKIM KPMITDFIAQ NSNDVEEAKT IIFNCTVQIL CDIMLKLGNN LPDKFKQRHG SWAHQICRSC ETSNTTVAKS VLKLAISFTT SPGDLCIAVE 1101: VAQELQNIMG LDKSDTLEVS ESYMVINQST SASVTSCILQ SIDSAIVDMD WATKKLKNFY VVSQKNIHLS DDTESTVGSV LEEALYSMAE STVRILSSFV 1201: LMNLKESQAA QFLRLAVRFY KQLAQIVKLR IAPKGCKQIL PSLKFQKLVE LTCKSLTVPL YPFLSEMQKV KVVQAVITLM FLRIQKREVL LLFQIQEQQE 1301: SVSHNSKGII NKIKQENKCI PDLIFQIEDC ERYLIQLSKV TKLNLLRHAK RSTARDFKII EDSDPPAGGE DGGNQEEETE TQNNNIGEDD LRQESDDDGS 1401: EEMLSPRNAS SVSSPGLDSD KTIAAATEED DEEEQEQDEG EEESGDNRPK KMARKSWVVE DSDEDSETF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)