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AT3G27150.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.828
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Galactose oxidase/kelch repeat superfamily protein
Curator
Summary (TAIR10)
Target gene of MIR2111-5p.
Computational
Description (TAIR10)
Galactose oxidase/kelch repeat superfamily protein; CONTAINS InterPro DOMAIN/s: Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: Galactose oxidase/kelch repeat superfamily protein (TAIR:AT5G40680.1); Has 8386 Blast hits to 4773 proteins in 282 species: Archae - 6; Bacteria - 402; Metazoa - 6487; Fungi - 23; Plants - 1074; Viruses - 50; Other Eukaryotes - 344 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4110X8DeggNOG:KOG1072EMBL:AP001312EMBL:CP002686
EnsemblPlants:AT3G27150EnsemblPlants:AT3G27150.1entrez:822334Gene3D:2.120.10.80
GeneID:822334Genevisible:Q9LI89GO:GO:0005634Gramene:AT3G27150.1
hmmpanther:PTHR24413hmmpanther:PTHR24413:SF143HOGENOM:HOG000239488InParanoid:Q9LI89
InterPro:IPR006652InterPro:IPR015915KEGG:ath:AT3G27150OMA:WEESKRC
PaxDb:Q9LI89Pfam:PF01344Pfam:Q9LI89PhylomeDB:Q9LI89
PRIDE:Q9LI89PRO:PR:Q9LI89ProteinModelPortal:Q9LI89Proteomes:UP000006548
RefSeq:NP_189351.1SMART:SM00612SMR:Q9LI89STRING:3702.AT3G27150.1
SUPFAM:0052715TAIR:AT3G27150UniGene:At.6227UniProt:Q9LI89
Coordinates (TAIR10) chr3:-:10009692..10010960
Molecular Weight (calculated) 47184.60 Da
IEP (calculated) 7.92
GRAVY (calculated) -0.28
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTLGEDQIG RIGASSSWSR SKKLRVHRYE IPDLNVEPSL DWDGEETGEA TKALSSTCLK PKDADYCLLN VPQLVYELEV EILARVPRFE YWKLKLLNKG
101: FSRLLKSDEI FKVRRERGVV EPSVFMLSSG DTCWTMFDKG FGNCQKLPEL PSDICFLHGD KESLCAGTHL IVTGKEEKSI ALWRYELETS KWFKGPAMIT
201: PRILFASATC GTVVFVAGGL KIEGNGTMEV VDSVEKYDSK TKTWTLLRGM HKRRKFCSGC YLRGKFYVLG GRDENGQNLT CGESYDEKTN TWELIPDILK
301: DMSFSSVQSP PLIAVVGDDL YSLETSANEL RVYDANANSW KKLGDVPVRA KSNGGWGVAF KSLGDKLLVI GASAGPSRAE TMSVYTSRPS ANPANKLYWE
401: ESKRCCGVRF NHFILNCCVM IA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)