AT3G11010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 34 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 34 (RLP34); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 53 (TAIR:AT5G27060.1); Has 142392 Blast hits to 33789 proteins in 1239 species: Archae - 73; Bacteria - 11207; Metazoa - 34063; Fungi - 1634; Plants - 83633; Viruses - 34; Other Eukaryotes - 11748 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:3450988..3453672 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99019.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.58 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||
| Length | 894 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVGIESHRKT ESWGNNSDCC NWEGVTCNAK SGEVIELNLS CSSLHGRFHS NSSIRNLHFL TTLDRSHNDF EGQITSSIEN LSHLTSLDLS YNRFSGQILN 101: SIGNLSRLTS LDLSFNQFSG QIPSSIGNLS HLTFLGLSGN RFFGQIPSSI GNLSHLTFLG LSGNRFFGQF PSSIGGLSNL TNLHLSYNKY SGQIPSSIGN 201: LSQLIVLYLS VNNFYGEIPS SFGNLNQLTR LDVSFNKLGG NFPNVLLNLT GLSVVSLSNN KFTGTLPPNI TSLSNLMAFY ASDNAFTGTF PSFLFIIPSL 301: TYLGLSGNQL KGTLEFGNIS SPSNLQYLNI GSNNFIGPIP SSISKLINLQ ELGISHLNTQ CRPVDFSIFS HLKSLDDLRL SYLTTTTIDL NDILPYFKTL 401: RSLDLSGNLV SATNKSSVSS DPPSQSIQSL YLSGCGITDF PEILRTQHEL GFLDVSNNKI KGQVPGWLWT LPNLFYLNLS NNTFIGFQRP TKPEPSMAYL 501: LGSNNNFTGK IPSFICELRS LYTLDLSDNN FSGSIPRCME NLKSNLSELN LRQNNLSGGF PEHIFESLRS LDVGHNQLVG KLPRSLRFFS NLEVLNVESN 601: RINDMFPFWL SSLQKLQVLV LRSNAFHGPI NQALFPKLRI IDISHNHFNG SLPTEYFVEW SRMSSLGTYE DGSNVNYLGS GYYQDSMVLM NKGVESELVR 701: ILTIYTAVDF SGNKFEGEIP KSIGLLKELH VLNLSNNAFT GHIPSSIGNL TALESLDVSQ NKLYGEIPQE IGNLSLLSYM NFSHNQLTGL VPGGQQFLTQ 801: RCSSFEGNLG LFGSSLEEVC RDIHTPASHQ QFETPQTEEE DEDLISWIAA AIGFGPGIAF GLMFGYILVS YKPEWFMNPF GRNNRRRKRH TTTH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)