AT3G23120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 38 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 38 (RLP38); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 37 (TAIR:AT3G23110.1); Has 120242 Blast hits to 33265 proteins in 1172 species: Archae - 42; Bacteria - 8485; Metazoa - 29672; Fungi - 1389; Plants - 71311; Viruses - 22; Other Eukaryotes - 9321 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:8227222..8229576 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 87233.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 784 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIRSQSYCFL GITITIYFFF CLLPLPNTFA SPPTQSLCRH DQRDALLELQ KEFPIPSVIL QNPWNKGIDC CSWGGVTCDA ILGEVISLKL YFLSTASTSL 101: KSSSALFKLQ HLTHLDLSNC NLQGEIPSSI ENLSHLTHLD LSTNHLVGEV PASIGNLNQL EYIDLRGNHL RGNIPTSFAN LTKLSLLDLH ENNFTGGDIV 201: LSNLTSLAIL DLSSNHFKSF FSADLSGLHN LEQIFGNENS FVGLFPASLL KISSLDKIQL SQNQFEGPID FGNTSSSSRL TMLDISHNNF IGRVPSSLSK 301: LVNLELLDLS HNNFRGLSPR SISKLVNLTS LDISYNKLEG QVPYFIWKPS NLQSVDLSHN SFFDLGKSVE VVNGAKLVGL NLGSNSLQGP IPQWICNFRF 401: VFFLDLSDNR FTGSIPQCLK NSTDFNTLNL RNNSLSGFLP ELCMDSTMLR SLDVSYNNFV GKLPKSLMNC QDMEFLNVRG NKIKDTFPFW LGSRKSLMVL 501: VLRSNAFYGP VYNSTTYLGF PRLSIIDISN NDFVGSLPQD YFANWTEMAT VWDINRLNYA RNTSSRTIQY GGLQTIQRSN YVGDNFNMHA DSMDLAYKGV 601: DTDFNRIFRG FKVIDFSGNR FSGHIPRSIG LLSELLHLNL SGNAFTGNIP PSLANITNLE TLDLSRNNLS GEIPRSLGNL SFLSNINFSH NHLQGFVPRS 701: TQFGTQNCSS FVGNPGLYGL DEICRESHHV PVPTSQQHDG SSSELEEPVL NWIAAAIAFG PGVFCGFVIG HIFTSYKHLW FIAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)