AT5G41750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16694047..16697527 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 120562.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1068 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MALSSSLSCI KRYQVFSSFH GPDVRKGFLS HLHSVFASKG ITTFNDQKID RGQTIGPELI QGIREARVSI VVLSKKYASS SWCLDELVEI LKCKEALGQI 0101: VMTVFYEVDP SDVKKQSGVF GEAFEKTCQG KNEEVKIRWR NALAHVATIA GEHSLNWDNE AKMIQKIVTD VSDKLNLTPS RDFEGMVGME AHLKRLNSLL 0201: CLESDEVKMI GIWGPAGIGK TTIARTLFNK ISSIFPFKCF MENLKGSIKG GAEHYSKLSL QKQLLSEILK QENMKIHHLG TIKQWLHDQK VLIILDDVDD 0301: LEQLEVLAED PSWFGSGSRI IVTTEDKNIL KAHRIQDIYH VDFPSEEEAL EILCLSAFKQ SSIPDGFEEL ANKVAELCGN LPLGLCVVGA SLRRKSKNEW 0401: ERLLSRIESS LDKNIDNILR IGYDRLSTED QSLFLHIACF FNNEKVDYLT ALLADRKLDV VNGFNILADR SLVRISTDGH VVMHHYLLQK LGRRIVHEQW 0501: PNEPGKRQFL IEAEEIRDVL TKGTGTESVK GISFDTSNIE EVSVGKGAFE GMRNLQFLRI YRDSFNSEGT LQIPEDMEYI PPVRLLHWQN YPRKSLPQRF 0601: NPEHLVKIRM PSSKLKKLWG GIQPLPNLKS IDMSFSYSLK EIPNLSKATN LEILSLEFCK SLVELPFSIL NLHKLEILNV ENCSMLKVIP TNINLASLER 0701: LDMTGCSELR TFPDISSNIK KLNLGDTMIE DVPPSVGCWS RLDHLYIGSR SLKRLHVPPC ITSLVLWKSN IESIPESIIG LTRLDWLNVN SCRKLKSILG 0801: LPSSLQDLDA NDCVSLKRVC FSFHNPIRAL SFNNCLNLDE EARKGIIQQS VYRYICLPGK KIPEEFTHKA TGRSITIPLS PGTLSASSRF KASILILPVE 0901: SYETDDISCS LRTKGGVEVH CCELPYHFLL RSRSEHLFIF HGDLFPQGNK YHEVDVTMSE ITFEFSHTKI GDKIIECGVQ IMTEGAEGDS SRELDSFETE 1001: SSSSQVDNFE TGGNNNHHTD GNGDGNYQAE GFKFFQDENI KTSKHTGFRS WLRELGLKVK KMNSHGVS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)