AT5G41740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G41750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16688687..16692235 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 117449.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.06 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1046 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSSSS SHIRRHHVFS RFHGPDVRKG FLSHLHSLFA SKGITTFNDQ NIERGQTIGP ELIQGIKEAR VSIVVLSKNY ASSSWCLDEL VEILKCKEAL 0101: GQIVMTSGVF GKAFEKTCQG KNEEVKIRWR NALAHVATIA GEHSLNWDNE AKMIQKIATD VSDKLNLTPS RDFEGMVGME AHLKRLNSLL CLESDEVKMI 0201: GIWGPAGIGK TTIARALFDD RLSSSFQHKC FMGNLKGSIK GVADHDSKLR LQKQLLSKIF KEENMKIHHL GAIRERLHDQ RVLIILDDVD DLKQLEVLAK 0301: EISWFGSGSR IIGTTEDKKI LKAHGIHNIY RVDFPSKKDA LEILCLSAFK QSSIPDGFEE LANKVAKLCS NLPLGLCVVG ASLRGEGNQE WERLLSRIES 0401: SLDRDIDDIL RIGYDRLLTN DKSLFLHIAC FFNYAKVDNV TALLADSNLD VGNGFNTLAD RSLVRISTYD DGISVLSDSN LDIVLEQSKE PGKREFIIEP 0501: EEIRDVLTNE TGTGSVIGIS FDTSNIGEVS VSKDAFEGMR NLRFLRIYRL LGGEVTLQIP EDMDYIPRLR LLYWDRYPRK SLPRRFKPER LVELHMPRSN 0601: LELLWGGIEP LPNLKIINLN RSYRLKEIPN LSKATNLERL TLESCLSLVE LPSSISNLHK LEILDVKFCS MLQVIPTNIN LASLERLDVS GCSRLRTFPD 0701: ISSNIKTLIF GNIKIEDVPP SVGCWSRLDQ LHISSRSLKR LMHVPPCITL LSLRGSGIER ITDCVIGLTR LHWLNVDSCR KLKSILGLPS SLKVLDANDC 0801: VSLKRVRFSF HNPMHTLDFN NCLKLDEEAK RGIIQRSVSR YICLPCKKIP EEFTHKATGK SITIPLAPGT LSASSRFKAS ILILPVESYE TEGISCSIRT 0901: KGGVEVHCCE LPYHFLRVRS EHLFIFHGDL FPQGNKYHEV DVTMSEITFE FSHTKIGDKI IECGVQIMTE GAEGDSSREL EVLKLRVAAA QLGDLLGNLN 1001: LEATTITTQM EMEMETMKQK VPSSLKMKTS KPANVGFMSW LRKLGQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)