AT4G27100.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.892 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G54780.1); Has 4127 Blast hits to 3971 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 2318; Fungi - 724; Plants - 626; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:13595845..13598534 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50162.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.12 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||
| Length | 436 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWGGAGEPAD SYYQVRPECT DVPKTRFKIK PGKTLSVRKW QAVFVQEGSL HIGKTLRRIR RGGIHPSIRG EVWEFLLGCY DPMSTFEERE QIRQRRRLQY 101: ASWKEECKQM FPVIGSGRFT TAPVITENGQ PNYDPLVLQE INLGTNSNGS VFFKELTSRG PLDKKIIQWL LTLHQIGLDV NRTDRALVFY EKKENLSKLW 201: DILSVYAWID NDVGYCQGMS DLCSPMIILL EDEADAFWCF ERLMRRLRGN FRSTGRSVGV EAQLTHLSSI TQVVDPKLHQ HLDKLGGGDY LFAIRMLMVQ 301: FRREFSFCDS LYLWEMMWAL EYDPDLFYVY EAHQCGNEKT EGLKGKPKSI KQCGKYERQN MRNGGKSAEG PLPISVFLVA SVLKDKSYKL MTEARGLDDV 401: VKILNDTTGN LDAKKTCSGA IKIHKRYLRK VISMFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)