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AT4G24320.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase family protein; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT1G71850.1); Has 408 Blast hits to 402 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 408; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JBH7eggNOG:ENOG411191AEMBL:AL078637EMBL:AL161561
EMBL:CP002687EMBL:DQ446865EnsemblPlants:AT4G24320EnsemblPlants:AT4G24320.1
entrez:828535GeneID:828535GO:GO:0016787Gramene:AT4G24320.1
hmmpanther:PTHR31476hmmpanther:PTHR31476:SF7InterPro:IPR021099KEGG:ath:AT4G24320
OMA:SPYENAFPfam:PF11955PhylomeDB:Q9STW2PIR:T09895
Proteomes:UP000006548RefSeq:NP_194163.1TAIR:AT4G24320UniGene:At.65419
UniProt:Q9STW2
Coordinates (TAIR10) chr4:-:12602298..12603485
Molecular Weight (calculated) 45692.60 Da
IEP (calculated) 10.40
GRAVY (calculated) -0.39
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAATTKLAR ALQQRRTFVN ARVKWVSDHY LDEAVQREKN LKQVISLKDR IVSSPSKSLP LSSLSLLKPL VNLHITAAAF FQKYPSVFTT FQPSPSHPLH
101: VRLTPQALTL HKEEETIHLS PPQRNVTVQR LTKFLMLTGA GSLPLYVLDR FRFDLGLPRD YITSLIGDYP EYFEVTEIKD RLTGEKTLAL TISSRRNNLP
201: VSEMERREAT IDGSRVKKGL RIRYSMNFPK GYELHKRVKN WVEQWQNLPY ISPYENAFHL GSYSDQAEKW AVAVLHELLF LLVSKKTETD NVICLGEYLG
301: FGMRFKKALV HHPGIFYMSH KIRTQTVVLR EAYHKVFLLE KHPLMGIRHQ YIYLMSKSGR GKKRDYVHGV ERSNRKKRVI KACEDGEIYA HNSSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)