AT4G13820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Leucine-rich repeat (LRR) family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Leucine-rich repeat (LRR) family protein; FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 47 (TAIR:AT4G13810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8008535..8010694 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 79881.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.66 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.02 | ||||||||||||||||||||||||||||||||
| Length | 719 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKMTIWSLCL ILSLSNSKLV LASHVKHLCR QDQKNALLEF KNEFYVHEFN SNGIVGVKKT EKWRNNTDCC SWDGISCDPK TGKVVELDLM NSFLNGPLRY 101: DSSLFRLQHL HNLDLGSNNF SGILPDSIGS LKYLRVLSLG DCNLFGKIPS SLGNLTYLTN LDLSVNDFTG ELPDSMGHLN KLTELHLGSA KLSGNFPSML 201: LNLSELTLID LGSNQFGGML PSNMSSLSKL VYFGIDRNSF SGSIPSSLFM LPSLTSLVLG RNDFNGPLDF GNISSPSNLG VLSLLENNFN GPIPESISKL 301: VGLFYLDLSL WNTKRGMVDF NTFLHLKSLT FLDLSYINTR SMVDISIFSP LLSLGYLDLS GINLKISSTL SLPSPMGTLI LSSCNIPEFP NFLENQTTLY 401: YLDISANKIG GQVPQWLWSL PELQYVNISQ NSFSGFEGPA DVIQRCGELL MLDISSNTFQ DPFPLLPNST TIFLGSDNRF SGEIPKTICK LVSLDTLVLS 501: NNNFNGSIPR CFEKFNTTLS VLHLRNNNLS GEFPEESISD HLRSLDVGRN RLSGELPKSL INCTRLEFLN VEDNIINDKF PFWLRMLPKL QIFVLRSNEF 601: HGPISSLGDS LSFPKLRIFD ISENRFNGVL RSDFFAGWSA MSSAVDIVDI MPSRYAGRDS GNYYNSVTMT VKGSIIELVG SVFTIYKTID VSGNRFEGRI 701: PESIGLLKEL IVLNMSNNG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)