AT4G13810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.397 golgi 0.242 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 47 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 47 (RLP47); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 50 (TAIR:AT4G13920.1); Has 94456 Blast hits to 27387 proteins in 1128 species: Archae - 39; Bacteria - 7351; Metazoa - 18966; Fungi - 1097; Plants - 59830; Viruses - 28; Other Eukaryotes - 7145 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:8005062..8007287 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82315.20 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.65 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 741 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTEKWRNNTD CCSWDGVSCD PKTGVVVELD LQYSHLNGPL RSNSSLFRLQ HLQKLVLGSN HLSGILPDSI GNLKRLKVLV LVNCNLFGKI PSSLGNLSYL 101: THLDLSYNDF TSEGPDSMGN LNRLTDMLLK LSSVTWIDLG DNQLKGMLPS NMSSLSKLEA FDISGNSFSG TIPSSLFMIP SLILLHLGRN DFSGPFEIGN 201: ISSPSNLQLL NIGRNNFNPD IVDLSIFSPL LSLGYLDVSG INLKISSTVS LPSPIEYLGL LSCNISEFPK FLRNQTSLEY LDISANQIEG QVPEWLWSLP 301: ELRYVNISHN SFNGFEGPAD VIQGGRELLV LDISSNIFQD PFPLLPVVSM NYLFSSNNRF SGEIPKTICE LDNLRILVLS NNNFSGSIPR CFENLHLYVL 401: HLRNNNLSGI FPEEAISHHL QSFDVGHNLF SGELPKSLIN CSDIEFLNVE DNRINDTFPS WLELLPNLQI LVLRSNEFYG PIFSPGDSLS FSRLRIFDIS 501: ENRFTGVLPS DYFVGWSVMS SVVDIDGRII QYTVTGIDRD FYHKSVALIN KGLKMELVGS GFTIYKTIDV SGNRLEGDIP ESIGLLKEVI VLSMSNNAFT 601: GHIPPSLSNL SNLQSLDLSQ NRLSGSIPGE LGKLTFLEWM NFSHNRLEGP IPETTQIQTQ DSSSFTENPG LCGAPLLKKC GGEEEATKQE QDEDKEEEDQ 701: VFSWIAAAIG YVPGVVCGLT IGHILVSHKR DWFMRIVSFF T |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)