AT4G02860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phenazine biosynthesis PhzC/PhzF protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phenazine biosynthesis PhzC/PhzF protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phenazine biosynthesis PhzC/PhzF protein (InterPro:IPR003719); BEST Arabidopsis thaliana protein match is: Phenazine biosynthesis PhzC/PhzF protein (TAIR:AT1G03210.1); Has 4066 Blast hits to 4061 proteins in 1265 species: Archae - 50; Bacteria - 3051; Metazoa - 120; Fungi - 130; Plants - 90; Viruses - 0; Other Eukaryotes - 625 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:1268952..1270508 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34318.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.97 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.01 | ||||||||||||||||||||||||||||||||||||
| Length | 313 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCDGKKEKNI TLLKKIDRDM GKKKGVKYFV VDAFTDSAFK GNPAAVCFLN DDNERDDTWL QSLAAEFNIS ETCFLIPITG FQARFSLRWF TPLAEVDLCG 101: HATLASAHCL FSNGLVDSDM VEFVTRSGIL TAKRVSDTSE LSDGEVKGGT FLIELNFPVV TTCDVNLSDV SSSMITKALN GATIVDIKAT ATNNILVVLP 201: SKESVTELQP RMDDILKCPC DGIIVTAAGS TGSSYDFYSR YFAPKFGVDE DPVCGSAHCA LAHYWSIKMN KFDFLAYQAS SRSGTIRIHL DKEKQRVLLR 301: GKAVTVMEGH VLV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)