AT1G62630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.808 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G63360.1); Has 16042 Blast hits to 14596 proteins in 629 species: Archae - 18; Bacteria - 843; Metazoa - 2230; Fungi - 170; Plants - 12480; Viruses - 6; Other Eukaryotes - 295 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23185912..23188593 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101911.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 893 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGISFSIPFD PCVNKVSQWL DMKGSYTHNL EKNLVALETT MEELKAKRDD LLRRLKREED RGLQRLSEFQ VWLNRVATVE DIIITLLRDR DVEIQRLCLC 101: RFCSKNLTTS YRYGKSVFLR LREVEKLKGE VFGVITEQAS TSAFEERPLQ PTIVGQKKML DKAWKHLMED GTGIMGMYGM GGVGKTTLLT QLFNMFNKDK 201: CGFDIGIWVV VSQEVNVEKI QDEIAQKLGL GGHEWTQRDI SQKGVHLFNF LKNKKFVLFL DDLWDKVELA NIGVPDPRTQ KGCKLAFTSR SLNVCTSMGD 301: EEPMEVQCLE ENVAFDLFQK KVGQKTLGSD PGIPQLARIV AKKCCGLPLA LNVIGETMSC KRTIQEWRNA IHVLNSYAAE FIGMEDKILP LLKYSYDNLK 401: GEHVKSSLLY CALYPEDAKI RKEDLIEHWI CEEIIDGSEG IEKAEDKGYD IIGSLVRASL LMECVDLKGK SSVIMHDVVR EMALWIASEL GIQKEAFIVR 501: AGVGVREIPK VKNWNVVRRM SLMGNKIHHL VGSYECMELT TLLLGEGEYG SIWRWSEIKT ISSEFFNCMP KLAVLDLSHN QSLFELPEEI SNLVSLKYLN 601: LSHTGIRHLS KGIQELKKII HLNLEHTSKL ESIDGISSLH NLKVLKLYGS RLPWDLNTVK ELETLEHLEI LTTTIDPRAK QFLSSHRLMS RSRLLQIFGS 701: NIFSPDRQLE SLSVSTDKLR EFEIMCCSIS EIKMGGICNF LSLVDVTIYN CEGLRELTFL IFAPKLRSLS VVDAKDLEDI INEEKACEGE DSGIVPFPEL 801: KYLNLDDLPK LKNIYRRPLP FLCLEKITIG ECPNLRKLPL DSRSGKQGEN GCIIHYKDSR WLKGVKWADE ATKKRFLPSC EHRLERCETI FED |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)