AT1G52160.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tRNAse Z3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a tRNase Z. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tRNAse Z3 (TRZ3); BEST Arabidopsis thaliana protein match is: tRNAse Z4 (TAIR:AT3G16260.1); Has 6463 Blast hits to 4305 proteins in 1644 species: Archae - 441; Bacteria - 4471; Metazoa - 273; Fungi - 252; Plants - 107; Viruses - 0; Other Eukaryotes - 919 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:19420911..19424419 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 98645.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.71 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||||||||||||||||||||||||||||||
| Length | 890 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MINSMPYLHK NLRLLRLLSS KSSPFPLSLR PFSPRSFSLS TLFSSSSSSS SMENNEATNG SKSSSNSFVF NKRRAEGFDI TDKKKRNLER KSQKLNPTNT 101: IAYAQILGTG MDTQDTSSSV LLFFDKQRFI FNAGEGLQRF CTEHKIKLSK IDHVFLSRVC SETAGGLPGL LLTLAGIGEE GLSVNVWGPS DLNYLVDAMK 201: SFIPRAAMVH TRSFGPSSTP DPIVLVNDEV VKISAIILKP CHSEEDSGNK SGDLSVVYVC ELPEILGKFD LEKAKKVFGV KPGPKYSRLQ SGESVKSDER 301: DITVHPSDVM GPSLPGPIVL LVDCPTESHA AELFSLKSLE SYYSSPDEQT IGAKFVNCII HLSPSSVTSS PTYQSWMKKF HLTQHILAGH QRKNMAFPIL 401: KASSRIAARL NYLCPQFFPA PGFWPSQLTD NSIIDPTPSN KCSSSNLAES ISAENLLKFN LRPVAIRGID RSCIPAPLTS SEVVDELLSE IPEIKDKSEE 501: IKQFWNKQHN KTIIEKLWLS ECNTVLPNCL EKIRRDDMEI VILGTGSSQP SKYRNVSAIF IDLFSRGSLL LDCGEGTLGQ LKRRYGLDGA DEAVRKLRCI 601: WISHIHADHH TGLARILALR SKLLKGVTHE PVIVVGPRPL KRFLDAYQRL EDLDMEFLDC RSTTATSWAS LESGGEAEGS LFTQGSPMQS VFKRSDISMD 701: NSSVLLCLKN LKKVLSEIGL NDLISFPVVH CPQAYGVVIK AAERVNSVGE QILGWKMVYS GDSRPCPETV EASRDATILI HEATFEDALI EEALAKNHST 801: TKEAIDVGSA ANVYRIVLTH FSQRYPKIPV IDESHMHNTC IAFDLMSINM ADLHVLPKVL PYFKTLFRDE MVEDEDADDV AMDDLKEEAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)