AT1G50730.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.916 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; Has 218 Blast hits to 209 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:18795275..18802098 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 103977.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||
| Length | 923 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MELEFRRRDY GATHKSQFLP RSQTQKHPLS STLASRDQQA KTVRGRDLHF FDPLRGLDVN ASAEENVEDT CISIEAVTQD LIKEWKSLKR ILMQRFPVSK 101: LLLCFTQSAV ESPSALSHPE ETGSEQTSLE EPAKIISQHE YIAKVHELRD GINSAWQAED RVTSLKLSIK VTKLLMDTTV LRFYPTVFVI VTDMLDMLGD 201: MVWERIKQKA ELDIDGTVIC ALPMISALKQ ERLAITGFAK LVLFENFSLA CKAPSIIIFL ILPTFLCLSI GLSLYAHSYL ELAILPCWRF LINQPMEVLD 301: RLVMMVRGLA DPLTSLYCRL YMVHRMQKFG FCSSGYLIKC IKDIEDVLAP VLVDKEGYSY ITDDKKLLFS LVEPAIEYIM KCLFLTGRQE NNVLGILEEL 401: GFGRNKFQSS YNSSHVSILL HYLLKELPSE LVSSLAMEIL DMIRCSNDCS FSQVLNYRLL GNRLSEGKSQ EGFLSSLIDE VIQAASQYQS LYDYLRIMDA 501: YVDLMLQNKM ENHLDALLDD IVSLARDKFL SEEEQASLQS IILKLLSHFE NLQEVLPLNH FIEILDLMSG TSKSSVNMHL LNMGTRNGCI CDSTTVQLLF 601: EVSQALYDAT DFVNIKDDDN RQTSHLISRF VEMVDYGAEM ERHLLFLAEC REAFNGIHEL KETLVRSSNT LAVKALKAGK KHINFVKSCL AFSEVTIPSI 701: SSPTKHLNLY LETAEVALLG GLISHSDELV MSAVEYLENV VLTDGLKSID IDSMASVICK LCSLLVMIPG NPEKGVMEIL KSIFSATRSS SWATLRVKVK 801: IFCAIMSLLS TLSQDNLPYH SANPEIIGNE LLFFGDSSYK QELVSCTQLV LSELLDAIEQ ESSQISRGNM ALEACNCISS ALVMNEKVKE LCLRLLETAK 901: GCLGANDRYI ESTKKSLQLR YTE |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)