AT4G18140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.963 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SCP1-like small phosphatase 4b | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4). | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SCP1-like small phosphatase 4b (SSP4b); CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: SCP1-like small phosphatase 4 (TAIR:AT5G46410.1); Has 2632 Blast hits to 2621 proteins in 242 species: Archae - 0; Bacteria - 12; Metazoa - 837; Fungi - 515; Plants - 509; Viruses - 1; Other Eukaryotes - 758 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:10046718..10049052 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51174.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.30 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||||||||||
| Length | 446 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPMPFLKMKS KISKDSLREK RVLGVCKKPH KDVKNSCFDP KISERMELLV TATQNCNNNE EQNIGLDSST RDVVTNEPQD LLVEDSSKNA SNMDTIFSPV 101: LDDELYSETD RVFVEGNNVQ WEMPRWGADD CSNNQFCNDS DYFLSDVLIA SLPFYESGNV DFFTEISPLP HCIFPEPSVL LDAAEQYMLL PYLEDRSASS 201: DDVKSDEDNR INRSRSKNLE AAENHTEAEQ TEDFDPQIFL RNQPELADVV FNYFPDMQQP RDSPKRKAVT LVLDLDETLV HSTLEVCRDT DFSFRVTFNM 301: QENTVYVKQR PYLYRFLERV VELFHVVIFT ASHSIYASQL LDILDPDGKF VSQRFYRDSC ILSDGIYTKD LTVLGLDLAK VAIVDNCPQV YRLQINNGIP 401: IKSWYDDPTD DGLITLLPFL ETLADANDVR PVIAKRFDHS TRSSFD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)