AT5G63020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (CC-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, defense response; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 14258 Blast hits to 13662 proteins in 567 species: Archae - 8; Bacteria - 542; Metazoa - 1192; Fungi - 130; Plants - 12234; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:25283252..25286002 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101807.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 888 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGCVSVSIS CDQLTKNVCS CLNRNGDYIH GLEENLTALQ RALEQIEQRR EDLLRKILSE ERRGLQRLSV VQGWVSKVEA IVPRVNELVR MRSVQVQRLC 101: LCGFCSKNLV SSYRYGKRVM KMIEEVEVLR YQGDFAVVAE RVDAARVEER PTRPMVAMDP MLESAWNRLM EDEIGILGLH GMGGVGKTTL LSHINNRFSR 201: VGGEFDIVIW IVVSKELQIQ RIQDEIWEKL RSDNEKWKQK TEDIKASNIY NVLKHKRFVL LLDDIWSKVD LTEVGVPFPS RENGCKIVFT TRLKEICGRM 301: GVDSDMEVRC LAPDDAWDLF TKKVGEITLG SHPEIPTVAR TVAKKCRGLP LALNVIGETM AYKRTVQEWR SAIDVLTSSA AEFSGMEDEI LPILKYSYDN 401: LKSEQLKLCF QYCALFPEDH NIEKNDLVDY WIGEGFIDRN KGKAENQGYE IIGILVRSCL LMEENQETVK MHDVVREMAL WIASDFGKQK ENFIVQAGLQ 501: SRNIPEIEKW KVARRVSLMF NNIESIRDAP ESPQLITLLL RKNFLGHISS SFFRLMPMLV VLDLSMNRDL RHLPNEISEC VSLQYLSLSR TRIRIWPAGL 601: VELRKLLYLN LEYTRMVESI CGISGLTSLK VLRLFVSGFP EDPCVLNELQ LLENLQTLTI TLGLASILEQ FLSNQRLASC TRALRIENLN PQSSVISFVA 701: TMDSLQELHF ADSDIWEIKV KRNETVLPLH IPTTTTFFPN LSQVSLEFCT RLRDLTWLIF APNLTVLRVI SASDLKEVIN KEKAEQQNLI PFQELKELRL 801: ENVQMLKHIH RGPLPFPCLQ KILVNGCSEL RKLPLNFTSV PRGDLVIEAH KKWIEILEWE DEATKARFLP TLKAFPENID ADGYEISF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)