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AT5G58980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.840
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Neutral/alkaline non-lysosomal ceramidase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Neutral/alkaline non-lysosomal ceramidase; FUNCTIONS IN: ceramidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Neutral/alkaline nonlysosomal ceramidase (InterPro:IPR006823); BEST Arabidopsis thaliana protein match is: Neutral/alkaline non-lysosomal ceramidase (TAIR:AT1G07380.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQWEeggNOG:KOG2232EMBL:CP002688EnsemblPlants:AT5G58980
EnsemblPlants:AT5G58980.1entrez:836015GeneID:836015Gramene:AT5G58980.1
hmmpanther:PTHR12670hmmpanther:PTHR12670:SF4InParanoid:F4KHQ8InterPro:IPR006823
InterPro:IPR031329InterPro:IPR031331KEGG:00600+3.5.1.23KEGG:ath:AT5G58980
KO:K12349OMA:STATIEWPANTHER:PTHR12670PaxDb:F4KHQ8
Pfam:PF04734Pfam:PF17048PRIDE:F4KHQ8ProteinModelPortal:F4KHQ8
Proteomes:UP000006548Reactome:R-ATH-1660662RefSeq:NP_200706.1SMR:F4KHQ8
STRING:3702.AT5G58980.1TAIR:AT5G58980UniGene:At.29250UniProt:F4KHQ8
Coordinates (TAIR10) chr5:-:23811449..23814395
Molecular Weight (calculated) 81842.30 Da
IEP (calculated) 6.63
GRAVY (calculated) -0.29
Length 733 amino acids
Sequence (TAIR10)
(BLAST)
001: MTRWSMSMHC TLFLLFLLRL TCIFSDSDYL MGLGSYDITG PAADVNMMGY ANMEQVASGV HFRLRARAFI VAEPYKKRIA FVNLDAGMAS QLVTIKVIER
101: LKQRYGELYT EENVAISGTH THAGPGGYLQ YILYLVTSLG FVHQSFNALV DGIEQSIIQA HENLRPGSIL INKGELLDAG VNRSPSAYLN NPAHERSKYE
201: YDVDKEMTLV KFVDDQWGPV ARIMEDWFER ENGCRSVDVE SPRRVSSIIS DPYDQDLMEM ASSLLSTGGK TVTRMSSVAR RVRSRFRHAD KPRFVSAFCQ
301: TNCGDVSPNV LGAFCIDTGL PCEFNQSTCG GKNEQCYGRG PGYPDEFEST RIIGERQFKK AADLFTKASE EIQGKVDYRH AYVDFSQLEV TINGQNGGSE
401: VVKTCPAAMG FGFAAGTTDG PGAFDFKQGD DQGNPFWRLV RNLLKNPTEE QVRCQRPKPI LLDTGEMKQP YDWAPSILPV QILRIGQLVI LCVPGEFTTM
501: AGRRLRDAVK TVLKEGSNGR EFSVVIAGLT NSYSQYIATF EEYQVQRYEG ASTLYGPHTL SGYIQEFKKL ANDLLSAQTT DPGPQPPDLL HKQISLLTPV
601: VADMTPIGTA FGDVTSDVPR LSKFRKGADI VRVQFRSANP RNDLMTEGTF ALVERWLEGR ETWVPVYDDD DFCLRFKWSR PFKLSTQSTA TIEWRIPETA
701: SPGVYRITHF GSAKTPISSI HHFSGSSSAF VVY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)