AT5G57010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.634 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : calmodulin-binding family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
calmodulin-binding family protein; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: calmodulin-binding family protein (TAIR:AT4G33050.3); Has 390 Blast hits to 271 proteins in 57 species: Archae - 0; Bacteria - 20; Metazoa - 0; Fungi - 100; Plants - 264; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:23068207..23070203 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56153.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.88 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||
| Length | 495 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALSFGYLQR DNSFKKDSQE CETPRIRKTP VNMYLEKTLS FKDLVDQRNN YRDGNCGVKT RKGINLKGPK PDNMILDRSL SFTSLVQVEN RGGEEEDERG 101: SSPKRRNRGN LTALSLPAPT PFWSPRPSTE LDAAAVTLQK VYKSYRTRRN LADCAVVVEE LWWKELELAK LEPNKTNDKP ESAVSRWARA GTKAAKVGKG 201: LLKDDKAQKL ALRHWLEAID PRHRYGHNLH LYYDVWSESE STQPFFFWLD IGDGKEVNLN KCSRTLLQRQ CITYLGPKER QAYEVVVEDG KLVSRQTKSL 301: VETTEGTKWI FVLSTTRKLY IGQKQKGRFQ HSSFLSGAAI TAAGRIVSHD GVVKAVWPYS GHYLPTEENF REFICFLREN HVNLTNVKMN AIDDDDHLVN 401: NDGSTKPSMM VAKSDGSDEQ KRFSCKWSTG NGPRIGCVRD YPMDLQTRAL EQVNLSPRVV NGTMGLFGPI PSPRPSPKIR VSPRLSCMGL PSPRH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)