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AT5G54650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : formin homology5
Curator
Summary (TAIR10)
Encodes a protein with similarity to formins that is involved in cytokinesis. Loss of function mutations exhibit delayed cellularization during endosperm development. FH5 is expressed in the endosperm and the protein localizes to the cell plate. FH5 was shown to be a maternally expressed imprinted gene.
Computational
Description (TAIR10)
formin homology5 (Fh5); CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 (formin homology 2) family protein (TAIR:AT3G05470.1); Has 73342 Blast hits to 35453 proteins in 1612 species: Archae - 110; Bacteria - 13185; Metazoa - 27017; Fungi - 7334; Plants - 12995; Viruses - 3113; Other Eukaryotes - 9588 (source: NCBI BLink).
Protein Annotations
BioGrid:20798eggNOG:ENOG410YCRQeggNOG:KOG1922EMBL:AB016879
EMBL:AK228971EMBL:AY042801EMBL:AY128923EMBL:AY581683
EMBL:AY611066EMBL:CP002688EnsemblPlants:AT5G54650EnsemblPlants:AT5G54650.1
EnsemblPlants:AT5G54650.2entrez:835554GeneID:835554Genevisible:Q94B77
GO:GO:0003779GO:GO:0005618GO:GO:0005737GO:GO:0009524
GO:GO:0009960GO:GO:0016021GO:GO:0030041GO:GO:0045010
GO:GO:0048317Gramene:AT5G54650.1Gramene:AT5G54650.2hmmpanther:PTHR23213
hmmpanther:PTHR23213:SF195HOGENOM:HOG000112580InParanoid:Q94B77InterPro:IPR015425
iPTMnet:Q94B77KEGG:ath:AT5G54650OMA:ERLSHEGPaxDb:Q94B77
Pfam:PF02181Pfam:Q94B77Pfscan:PS51444PhylomeDB:Q94B77
PRIDE:Q94B77PRO:PR:Q94B77PROSITE:PS51444ProteinModelPortal:Q94B77
Proteomes:UP000006548RefSeq:NP_200276.1RefSeq:NP_851191.1SMART:SM00498
SMR:Q94B77STRING:3702.AT5G54650.1SUPFAM:SSF101447TAIR:AT5G54650
tair10-symbols:ATFH5tair10-symbols:Fh5TMHMM:TMhelixUniGene:At.6921
UniProt:Q94B77
Coordinates (TAIR10) chr5:-:22197856..22201649
Molecular Weight (calculated) 98363.40 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.54
Length 900 amino acids
Sequence (TAIR10)
(BLAST)
001: MVGMIRGGMG DQNWSRLVFW LILFSGLLVI TLEENPEKDE IFLSQFMAPS TGQVNEHMEE TSWAQRCWQD SDCVKEAVAE FNLCFPGSKD SRELFGLNHT
101: NLKQTLLDCI QEKGKLNGHN PKYLELLSSM LDIPRRNLAT KPGSSPSPSP SRPPKRSRGP PRPPTRPKSP PPRKSSFPPS RSPPPPPAKK NASKNSTSAP
201: VSPAKKKEDH EKTIIIAVVV TAVSTFLLAA LFFLCCSRVC GNGSGGRKND ERPLLSLSSS DYSVGSSINY GGSVKGDKQG HQSFNIYSNQ GKMSSFDGSN
301: SDTSDSLEER LSHEGLRNNS ITNHGLPPLK PPPGRTASVL SGKSFSGKVE PLPPEPPKFL KVSSKKASAP PPPVPAPQMP SSAGPPRPPP PAPPPGSGGP
401: KPPPPPGPKG PRPPPPMSLG PKAPRPPSGP ADALDDDAPK TKLKPFFWDK VQANPEHSMV WNDIRSGSFQ FNEEMIESLF GYAAADKNKN DKKGSSGQAA
501: LPQFVQILEP KKGQNLSILL RALNATTEEV CDALREGNEL PVEFIQTLLK MAPTPEEELK LRLYCGEIAQ LGSAERFLKA VVDIPFAFKR LEALLFMCTL
601: HEEMAFVKES FQKLEVACKE LRGSRLFLKL LEAVLKTGNR MNDGTFRGGA QAFKLDTLLK LADVKGTDGK TTLLHFVVQE IIRTEGVRAA RTIRESQSFS
701: SVKTEDLLVE ETSEESEENY RNLGLEKVSG LSSELEHVKK SANIDADGLT GTVLKMGHAL SKARDFVNSE MKSSGEESGF REALEDFIQN AEGSIMSILE
801: EEKRIMALVK STGDYFHGKA GKDEGLRLFV IVRDFLIILD KSCKEVREAR GRPVRMARKQ GSTASASSET PRQTPSLDPR QKLFPAITER RVDQSSSDSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)