AT3G61800.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2043 (InterPro:IPR018610), ENTH/VHS (InterPro:IPR008942); Has 308 Blast hits to 279 proteins in 95 species: Archae - 2; Bacteria - 30; Metazoa - 120; Fungi - 19; Plants - 44; Viruses - 2; Other Eukaryotes - 91 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:22874723..22876846 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75989.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||
| Length | 664 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEGRDDGGGK VIGLIEKATK STAQEVDPRL LKAIKSIVRY SDSEVRLSSQ TLMELMRHNH SQVRYLTLFI IDELFMRSKL FRTLIIENLD QLLSLSIGFR 101: SNLPLPAPPA VATTLRSKAI EFLEKWNLSF GFHYKELRLG FDYLKNTLKL KFPDLQANAA RIQRERQERE MKTKEILRNK FDSLRVSFGL FKYEIEVTIK 201: EIKECMEIVQ WRGDDGVPLA ILDEEDFEEI RCSHLRQIRL DSLKQSEKVE ETGENRIVFD VLREQCKLLV TKHLISVQEG ISLLIRVDVS DNRTRDSMLK 301: DLIDIRNNIL AAKKKWEEAG FTMSRMTDIH GNEETNEEEE DIWEEDDGKV KTDSVKNVAH VMRTQQSENS SLPSSGEAKK STSEARSNKV SNTKKVGSSG 401: NSLRDKLISE APVMNWGSQL TNWESTTEVR ANYRGLEIES HWGRVDQDAI IPADKIAELN LQATVYREER TETPPCRASL KKGGLCQRRD LRVCPFHGPI 501: VPRDDEGNTI IQESPLDESE NQTSSTSGTN QDVSMDETTS DSDPNQLARQ IAKEALKNIR EKDKEVVRKR AKLVKVKVKE HNHEVLRGAA IASTSRSNAM 601: DDEFDRVFAE KKNKKQTFST RRKKTTAKDR ISQRLFSNRV KGTNPQQLAQ GNDEKCRDTS ANQW |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)